Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 5.0e-165 584.3 291 100.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.2e-104 382.9 277 74.0
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.8e-104 382.1 286 72.0
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.4e-103 380.2 277 74.4
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-97 360.5 276 69.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.1e-92 344.0 285 64.9
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.3e-90 335.1 261 70.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 5.9e-89 331.6 258 69.0
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.5e-88 328.2 279 64.9
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.5e-71 271.2 277 52.3
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.4e-69 267.3 275 51.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.3e-69 266.5 277 53.4
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 4.0e-69 265.8 280 50.0
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 5.7e-68 261.9 274 54.4
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 9.8e-68 261.2 273 52.4
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.2e-67 260.0 283 50.9
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.8e-67 259.6 273 54.6
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.8e-67 259.6 298 51.0
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.4e-66 257.3 285 49.1
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 7.0e-66 255.0 275 51.6
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 7.0e-66 255.0 281 53.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 9.2e-66 254.6 276 51.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.0e-64 251.1 297 50.2
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.3e-64 250.8 273 47.3
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.7e-64 250.4 283 49.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.9e-64 249.6 301 48.8
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.9e-64 249.6 301 48.8
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 8.6e-64 248.1 283 48.4
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.3e-63 246.1 281 50.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 3.3e-63 246.1 282 51.4
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 4.3e-63 245.7 284 48.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 7.3e-63 245.0 280 50.7
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 2.8e-62 243.0 278 49.3
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.8e-61 240.4 286 48.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-61 240.4 297 47.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-60 236.9 265 49.8
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-60 236.9 265 49.8
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 5.8e-60 235.3 295 46.8
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.2e-59 233.4 278 47.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 6.4e-59 231.9 274 50.0
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 8.3e-59 231.5 274 49.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 8.3e-59 231.5 295 47.1
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.4e-58 229.9 278 48.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.4e-58 229.9 261 51.7
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 3.2e-58 229.6 292 49.3
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 3.2e-58 229.6 294 46.3
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 9.2e-58 228.0 263 47.5
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.2e-57 227.6 293 45.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 4.6e-57 225.7 281 47.0
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.3e-56 223.4 300 46.7
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.9e-56 222.6 297 45.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 3.9e-56 222.6 275 47.3
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.9e-56 222.6 273 47.6
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 3.9e-56 222.6 275 47.3
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-55 221.1 283 46.6
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.5e-55 220.7 280 45.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 5.6e-55 218.8 232 49.6
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 9.5e-55 218.0 297 44.8
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.2e-54 217.6 233 50.6
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.1e-54 216.9 280 45.4
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.2e-54 215.3 287 46.0
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.8e-53 213.8 274 46.4
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.3e-53 213.4 273 44.7
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 3.1e-53 213.0 273 44.3
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 4.0e-53 212.6 274 47.1
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.9e-53 211.5 263 46.4
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.0e-52 210.3 274 44.5
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 3.4e-52 209.5 273 45.8
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.8e-52 208.8 273 45.8
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 5.8e-52 208.8 225 51.6
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 7.5e-52 208.4 283 43.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 7.5e-52 208.4 273 46.2
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 7.5e-52 208.4 273 45.8
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 7.5e-52 208.4 273 44.7
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 9.8e-52 208.0 283 43.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.8e-52 208.0 273 44.7
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.3e-51 207.6 273 46.2
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.9e-51 206.5 269 43.5
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.7e-51 206.1 243 47.7
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.9e-51 205.7 276 43.5
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 4.9e-51 205.7 266 45.5
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.4e-51 205.3 233 49.8
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.4e-50 204.1 274 46.0
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.4e-50 204.1 281 43.8
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.9e-50 203.8 274 46.0
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.4e-50 203.4 277 44.8
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.4e-50 203.4 273 44.3
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 4.1e-50 202.6 274 45.3
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 4.1e-50 202.6 277 43.0
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.1e-50 201.8 273 45.4
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.6e-49 200.7 273 42.5
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 7.8e-49 198.4 275 44.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 7.8e-49 198.4 210 50.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-48 198.0 263 46.0
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 6.6e-48 195.3 268 43.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.1e-47 194.5 275 44.0
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.5e-47 194.1 259 45.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.9e-47 193.7 210 49.5
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.3e-47 193.0 270 42.2
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 9.5e-47 191.4 210 49.5
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-46 190.3 210 48.6
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.8e-46 189.9 210 48.6
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.8e-46 189.9 234 47.9
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 6.8e-45 185.3 279 41.2
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 6.8e-45 185.3 279 41.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.9e-42 177.2 250 43.6
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.4e-42 176.8 266 44.0
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 4.1e-42 176.0 274 42.7
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 5.6e-39 165.6 211 46.0
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 4.0e-37 159.5 258 40.3
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 8.9e-37 158.3 226 44.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.6e-36 156.8 219 40.6
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 7.6e-36 155.2 190 46.8
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-35 154.1 165 50.3
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.4e-35 151.8 185 45.9
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.9e-34 150.6 254 37.4
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-34 150.2 288 37.2
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 2.4e-34 150.2 257 36.6
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 5.4e-34 149.1 165 47.3
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.3e-34 148.3 185 45.4
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-33 147.9 185 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.5e-33 146.4 210 40.0
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-33 146.4 185 45.9
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-33 146.4 185 45.9
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.5e-33 146.4 185 45.9
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 8.7e-32 141.7 258 37.2
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.1e-31 141.4 213 37.1
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.1e-30 137.1 267 35.6
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.6e-28 128.6 306 32.4
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.1e-26 124.8 148 45.3
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 5.4e-26 122.5 126 54.0
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 7.1e-26 122.1 208 39.9
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.1e-25 120.6 187 39.6
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.9e-24 116.3 134 50.7
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.7e-24 115.2 153 41.8
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-23 114.8 113 60.2
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.1e-22 110.5 285 31.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.1e-22 108.6 258 29.8
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-21 106.7 127 48.8
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.0e-21 105.1 172 39.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.2e-19 100.5 81 50.6
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 3.8e-19 99.8 120 51.7
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.0e-16 90.1 152 38.2
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.9e-10 70.9 45 66.7
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.7e-09 67.0 81 42.0
FAN24G2636 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.5e-09 66.6 83 48.2
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.5e-09 66.6 45 64.4


User provided reference genes

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