Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 6.7e-193 677.2 341 100.0
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.7e-180 636.0 343 94.8
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 1.5e-179 632.9 343 94.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.9e-179 632.5 343 94.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 3.6e-162 575.1 341 85.0
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.0e-152 542.7 389 76.1
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 7.5e-152 540.8 346 80.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.1e-150 537.0 346 79.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.1e-150 535.0 346 79.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.5e-147 526.6 352 76.4
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.0e-145 520.4 343 79.3
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.4e-142 509.2 341 77.4
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.9e-140 501.9 346 74.0
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.9e-140 501.9 344 75.6
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.5e-139 500.0 346 75.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.8e-138 495.7 345 75.1
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.1e-137 493.8 342 74.0
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 6.8e-137 491.1 347 73.8
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.0e-136 489.6 350 72.3
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-134 483.8 345 72.8
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.1e-134 483.8 349 72.2
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.4e-134 482.6 338 73.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.2e-134 482.3 358 72.3
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-134 482.3 346 73.7
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.2e-134 482.3 346 73.7
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-133 479.9 346 72.8
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 5.6e-131 471.5 350 71.7
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.8e-130 469.2 338 73.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.6e-130 468.8 346 71.1
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.7e-130 468.4 349 73.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 4.7e-130 468.4 346 71.7
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.1e-129 467.2 346 71.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.8e-129 466.5 344 71.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.3e-129 466.1 348 69.5
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-129 466.1 338 72.8
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.1e-129 465.7 338 73.1
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.9e-127 458.4 341 69.8
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.6e-125 453.4 349 70.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.6e-125 451.8 338 72.2
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.0e-125 451.4 347 70.3
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.0e-124 450.7 347 70.3
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.0e-124 449.1 348 69.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.1e-124 448.4 347 69.5
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 6.6e-124 448.0 347 70.3
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.1e-123 447.2 346 67.9
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-123 446.4 338 71.6
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 7.3e-123 444.5 411 61.1
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.2e-122 443.7 338 71.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.6e-122 443.4 346 68.8
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 8.1e-122 441.0 346 69.7
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 8.1e-122 441.0 346 69.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.1e-121 440.7 347 68.3
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 5.2e-121 438.3 347 68.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 8.9e-121 437.6 343 66.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.0e-120 436.4 347 69.2
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 7.6e-120 434.5 346 68.8
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 7.6e-120 434.5 346 68.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.3e-119 433.7 342 67.8
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.7e-119 433.3 348 68.1
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.9e-119 431.8 349 68.5
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.4e-119 431.4 416 58.9
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-118 430.6 346 68.8
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.8e-117 424.5 346 68.2
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-114 417.2 350 65.4
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.6e-114 416.8 396 59.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 8.1e-114 414.5 348 64.7
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.4e-113 413.7 345 62.9
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.8e-113 413.3 322 69.3
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 9.0e-113 411.0 346 63.0
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 9.0e-113 411.0 351 65.5
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.2e-112 410.6 347 63.7
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.2e-112 410.6 348 64.1
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.2e-112 410.6 346 65.0
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-112 410.6 350 64.6
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.0e-112 409.8 347 65.7
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.6e-112 409.5 349 63.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.4e-110 402.9 348 62.4
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.4e-110 402.9 347 65.1
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.2e-110 402.5 344 62.5
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 4.2e-110 402.1 344 62.5
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 4.2e-110 402.1 347 65.1
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 4.2e-110 402.1 346 64.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 9.3e-110 401.0 346 63.6
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.1e-109 399.8 348 62.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 3.5e-109 399.1 330 66.7
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-108 397.1 298 72.8
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.3e-108 397.1 348 62.9
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.7e-108 396.7 351 63.5
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.9e-108 395.6 349 64.5
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 5.1e-108 395.2 346 63.6
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 6.6e-108 394.8 346 61.6
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.6e-108 394.8 359 64.1
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.1e-107 394.0 346 62.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-107 392.9 347 61.1
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 4.3e-107 392.1 342 61.1
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 9.6e-107 391.0 346 62.4
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.3e-106 390.6 346 62.4
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.8e-106 389.4 339 66.1
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.6e-106 389.0 274 71.9
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 6.2e-106 388.3 349 62.8
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 4.0e-105 385.6 324 66.4
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 9.0e-105 384.4 346 60.7
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 4.5e-104 382.1 343 62.1
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 8.4e-103 377.9 349 61.0
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.4e-102 377.1 346 61.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.4e-102 376.3 345 60.6
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.2e-102 375.9 345 60.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.2e-102 375.6 328 62.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.6e-101 373.6 352 57.4
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.7e-101 372.9 343 58.6
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.7e-101 372.9 344 60.5
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-101 372.5 324 61.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.5e-101 372.5 324 61.4
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 4.6e-101 372.1 324 63.0
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-100 369.4 328 61.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.5e-99 367.1 347 59.1
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 4.3e-99 365.5 347 58.2
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-98 363.2 348 58.0
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-98 363.2 326 62.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.7e-98 362.5 353 59.5
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 4.8e-98 362.1 347 58.8
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 8.1e-98 361.3 345 61.4
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.4e-97 360.5 273 71.4
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 7.6e-96 354.8 343 60.1
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 7.6e-96 354.8 343 59.8
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.0e-95 354.4 349 57.3
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 4.9e-95 352.1 343 56.9
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 6.5e-95 351.7 341 59.8
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 8.4e-95 351.3 350 55.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-94 350.1 346 57.8
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-94 350.1 346 57.8
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.7e-93 346.3 349 55.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-92 343.2 346 57.5
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.9e-91 340.1 344 57.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 4.3e-91 339.0 350 56.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.7e-91 338.6 343 56.0
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.4e-89 333.2 347 53.9
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.1e-89 332.4 250 70.8
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 4.5e-88 328.9 348 53.7
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.9e-87 326.2 260 68.1
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 7.9e-85 318.2 285 63.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.1e-73 281.2 341 52.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 6.5e-71 271.9 209 69.9
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.2e-66 256.9 251 55.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.2e-61 241.1 342 44.7
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 8.0e-53 211.8 351 40.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 2.3e-52 210.3 322 42.9
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 6.1e-37 159.1 385 33.0
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.4e-33 147.9 244 41.0
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 6.2e-29 132.5 155 52.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.3e-28 130.6 157 51.6
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 4.0e-20 103.2 234 34.2
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.3e-18 98.2 91 54.9
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 6.4e-18 95.9 161 39.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 1.2e-13 81.6 147 34.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.2e-11 75.1 178 34.8
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.3e-10 71.6 259 27.4
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 5.4e-09 66.2 186 30.6
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.1e-06 58.5 230 24.3
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 2.5e-06 57.4 257 25.3
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 7.3e-06 55.8 346 24.0


User provided reference genes

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