Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 3.6e-155 552.0 314 100.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.5e-145 520.0 314 93.3
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 4.9e-144 515.0 319 93.4
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.8e-138 496.5 339 87.0
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 7.4e-132 474.6 326 86.8
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.8e-131 472.6 326 83.4
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.3e-117 426.4 322 77.3
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 8.8e-117 424.5 323 79.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.2e-115 419.9 322 77.6
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 3.7e-115 419.1 252 84.9
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.5e-113 413.7 327 76.1
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.5e-113 413.7 328 77.1
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 5.9e-113 411.8 325 76.3
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.3e-112 410.6 332 76.2
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.9e-112 409.5 335 75.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.8e-112 409.1 322 75.8
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.8e-112 409.1 322 75.5
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.1e-111 407.5 346 73.1
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.5e-111 407.1 327 76.1
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.9e-111 406.8 325 74.8
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 7.2e-111 404.8 323 77.7
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 7.2e-111 404.8 331 74.9
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.2e-109 398.7 340 73.5
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.2e-109 398.7 340 73.5
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.0e-108 396.7 330 75.8
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.3e-107 394.0 325 74.2
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.7e-107 393.7 335 75.5
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.8e-107 392.9 325 68.3
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 4.8e-107 392.1 252 79.4
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.2e-107 391.3 328 75.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.1e-106 389.4 326 75.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 7.0e-106 388.3 246 81.3
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 2.6e-105 386.3 321 71.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.9e-105 385.2 333 71.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.0e-104 384.4 332 72.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.2e-104 383.3 326 74.8
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.9e-104 382.9 326 75.2
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.9e-103 380.2 313 74.4
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 3.2e-103 379.4 316 69.9
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.2e-103 379.0 249 78.7
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.7e-102 376.3 332 73.8
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 8.0e-102 374.8 323 72.8
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.8e-101 373.6 330 66.4
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.3e-101 373.2 332 67.2
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.0e-101 372.9 333 67.0
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 4.0e-101 372.5 323 72.1
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 4.0e-101 372.5 326 70.9
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.2e-101 372.1 335 66.6
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.2e-101 372.1 335 66.6
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.8e-101 371.3 328 73.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.2e-100 370.9 334 66.5
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-100 370.9 332 66.9
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 7.5e-100 368.2 330 68.2
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.7e-99 365.9 327 66.4
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.7e-99 365.9 327 66.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.1e-98 362.8 334 65.0
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.1e-98 362.5 242 77.7
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 9.1e-98 361.3 330 64.8
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.1e-98 361.3 330 63.3
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.0e-97 360.1 329 68.1
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.5e-97 359.4 327 66.7
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 7.7e-97 358.2 284 66.9
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.3e-96 357.5 326 65.6
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 2.2e-96 356.7 331 65.6
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 6.5e-96 355.1 327 70.3
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 8.5e-96 354.8 331 68.0
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.1e-95 354.4 337 68.5
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.9e-95 353.6 329 60.2
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 5.5e-95 352.1 314 63.7
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.5e-95 352.1 330 65.8
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.6e-94 350.5 323 70.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.6e-94 349.4 321 61.7
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.0e-93 346.3 328 70.1
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 6.8e-93 345.1 329 69.0
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 8.8e-93 344.7 327 61.2
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.2e-92 344.4 332 67.2
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.4e-92 342.8 344 63.1
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.4e-92 342.8 256 70.7
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.2e-91 340.1 326 59.8
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 6.3e-91 338.6 254 72.8
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.4e-90 337.4 322 60.9
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.4e-90 337.4 325 69.2
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.4e-90 336.7 328 65.9
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.2e-89 334.3 334 62.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 3.5e-89 332.8 253 70.4
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.7e-89 331.6 250 71.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.3e-88 330.1 320 62.8
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.3e-88 330.1 314 64.0
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 4.7e-86 322.4 215 80.5
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 8.0e-86 321.6 216 76.9
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 4.0e-85 319.3 214 80.8
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 9.8e-84 314.7 246 67.5
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.7e-80 303.9 360 56.4
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 5.0e-80 302.4 326 55.5
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.5e-79 300.8 401 52.4
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 6.2e-78 295.4 236 66.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.8e-77 293.9 258 65.9
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.2e-76 291.2 240 64.6
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.0e-76 290.4 218 73.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.3e-75 287.7 227 69.6
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.7e-75 287.3 234 65.0
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 6.4e-75 285.4 332 56.9
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.4e-74 284.3 236 63.6
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.2e-74 283.1 320 55.0
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 3.5e-73 279.6 324 51.2
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.3e-72 276.9 326 56.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 3.9e-72 276.2 257 58.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.1e-71 274.6 228 68.9
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.5e-71 273.5 345 55.4
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 4.3e-71 272.7 333 54.7
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 5.6e-71 272.3 189 78.3
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 7.3e-71 271.9 321 60.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 2.1e-70 270.4 197 73.6
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 7.5e-68 261.9 339 53.7
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 2.2e-67 260.4 215 72.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.9e-66 257.3 330 54.5
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 3.2e-66 256.5 318 50.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 6.6e-64 248.8 334 56.6
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.6e-62 244.2 251 56.6
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.6e-62 244.2 251 56.6
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 4.0e-61 239.6 254 56.3
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 4.0e-61 239.6 254 56.3
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 8.9e-61 238.4 254 56.3
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 6.6e-56 222.2 253 54.5
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.2e-52 211.5 210 68.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 5.4e-50 202.6 262 45.4
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.3e-48 197.2 102 99.0
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 7.1e-42 175.6 161 61.5
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.5e-39 167.9 132 72.0
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.4e-37 161.4 218 49.1
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 7.6e-28 129.0 208 42.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-27 128.3 114 84.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 3.2e-26 123.6 152 42.8
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 4.2e-26 123.2 149 45.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 7.9e-25 119.0 136 42.6
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 4.1e-21 106.7 150 39.3
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.0e-21 105.5 121 44.6
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.6e-20 104.0 116 75.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 5.9e-20 102.8 119 52.1
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 8.4e-19 99.0 120 43.3
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 8.4e-19 99.0 130 38.5
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 7.2e-18 95.9 114 60.5
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 2.7e-17 94.0 143 60.1
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 6.1e-17 92.8 114 69.3
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.8e-16 91.3 124 70.2
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.3e-16 90.9 108 50.0
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.2e-12 78.6 53 64.2
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.0e-08 63.9 35 82.9
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-07 61.2 96 43.8
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 9.7e-07 58.9 121 37.2


User provided reference genes

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