Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 9.1e-257 889.8 469 100.0
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.7e-250 867.8 469 97.7
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 6.3e-250 867.1 469 97.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.1e-249 864.4 469 97.0
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.5e-248 862.4 469 96.8
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.2e-247 858.6 471 97.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 4.8e-242 840.9 469 93.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.6e-240 835.9 469 93.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 5.9e-240 833.9 469 92.5
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.9e-240 833.9 469 92.3
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.3e-239 832.8 469 92.5
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.9e-239 831.6 469 93.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 2.9e-239 831.6 469 93.4
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.5e-239 830.1 469 92.5
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 5.5e-238 827.4 469 93.0
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 9.4e-238 826.6 469 91.7
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 8.0e-237 823.5 469 92.3
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 8.8e-236 820.1 468 91.2
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.2e-234 815.5 469 92.1
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.2e-234 815.5 468 91.9
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 8.2e-234 813.5 470 90.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 8.2e-234 813.5 469 90.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.1e-233 811.6 469 90.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 7.0e-233 810.4 469 90.4
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.0e-232 808.9 469 90.2
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.0e-232 808.9 470 90.0
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.0e-231 806.6 469 91.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.9e-231 805.1 469 89.6
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.0e-231 804.3 469 89.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.0e-231 804.3 469 89.1
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 5.0e-231 804.3 506 84.8
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 88.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.5e-230 800.8 493 86.8
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 7.2e-230 800.4 469 91.5
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 7.2e-230 800.4 469 88.3
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 9.4e-230 800.0 469 88.9
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.1e-229 798.9 469 88.5
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 2.1e-229 798.9 469 89.3
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 4.7e-229 797.7 468 90.8
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.8e-228 795.8 469 88.1
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 2.3e-228 795.4 469 88.9
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 6.8e-228 793.9 506 83.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 8.8e-228 793.5 469 89.6
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.2e-227 793.1 469 89.3
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.0e-227 792.3 468 88.0
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-227 792.0 470 88.1
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.2e-226 788.9 470 87.7
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.8e-226 788.5 470 87.7
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 3.7e-226 788.1 470 87.7
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 4.8e-226 787.7 470 87.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 6.3e-226 787.3 469 89.3
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 6.3e-226 787.3 469 88.7
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.1e-225 786.6 463 88.3
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 7.0e-225 783.9 449 92.2
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.2e-224 783.1 469 88.3
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.7e-223 779.2 468 88.2
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.3e-222 775.0 545 78.5
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 5.2e-220 767.7 469 87.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.2e-220 767.7 469 86.6
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.5e-219 766.1 469 85.7
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.0e-219 765.8 469 86.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.6e-219 765.4 469 86.1
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 5.7e-219 764.2 441 90.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 85.9
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 84.4
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 85.9
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 85.7
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 4.9e-218 761.1 469 85.3
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 85.7
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 85.7
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-217 760.0 469 85.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.4e-217 759.6 469 85.1
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 85.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 85.7
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 3.5e-216 755.0 469 83.8
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.5e-216 754.6 469 84.6
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 1.7e-215 752.7 470 85.5
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.6e-215 750.4 469 84.4
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.5e-214 748.8 469 84.4
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 9.5e-214 746.9 470 84.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 9.5e-214 746.9 470 84.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 8.0e-213 743.8 497 80.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 5.2e-212 741.1 471 84.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.4e-211 738.4 491 81.5
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 4.4e-211 738.0 493 80.7
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 7.5e-211 737.3 470 84.0
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.7e-208 728.8 492 79.7
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 2.1e-205 719.2 418 90.7
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.0e-204 714.9 397 94.0
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.5e-198 695.7 470 81.3
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 2.8e-197 692.2 418 88.3
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 2.8e-197 692.2 418 88.3
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.2e-196 688.0 418 87.8
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.7e-191 672.9 423 84.6
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 9.5e-190 667.2 383 91.1
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.6e-189 665.2 469 78.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 8.1e-189 664.1 469 73.1
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.4e-187 658.7 461 78.1
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 7.1e-177 624.4 340 98.2
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 9.0e-172 607.4 373 85.5
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 2.0e-171 606.3 350 90.0
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 9.9e-171 604.0 467 68.1
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.4e-164 583.6 374 83.7
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.8e-164 583.2 366 85.8
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.0e-163 579.7 469 68.2
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.9e-162 575.9 470 63.0
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 2.9e-162 575.9 324 95.1
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 3.9e-143 512.3 365 77.0
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.5e-139 500.4 308 88.6
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 2.7e-136 489.6 312 81.4
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.1e-132 476.1 324 80.6
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.9e-115 418.7 246 90.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.4e-92 344.4 312 65.4
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 7.8e-83 312.0 238 74.4
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.3e-82 310.5 182 84.1
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.1e-81 308.1 173 87.9
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.5e-81 305.1 302 56.6
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.7e-77 294.3 505 38.0
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.1e-72 275.4 210 60.5
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.1e-71 273.5 294 54.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 3.4e-70 270.0 160 90.6
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 4.9e-61 239.6 195 72.8
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.9e-60 237.7 140 91.4
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-55 221.9 407 40.8
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 3.1e-55 220.3 119 98.3
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.4e-47 194.9 338 36.4
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.9e-47 192.6 111 91.9
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.8e-45 186.8 107 81.3
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 4.9e-45 186.4 111 90.1
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.5e-45 186.0 106 84.0
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.4e-44 184.9 490 31.2
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.8e-40 169.9 91 95.6
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.9e-31 139.4 75 92.0
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.7e-29 134.8 74 91.9
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 2.1e-27 127.9 81 84.0
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.3e-26 124.4 71 88.7
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.3e-26 124.4 71 87.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.1e-25 122.1 71 87.3
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.8e-24 117.5 99 66.7
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-23 115.5 74 81.1
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 4.5e-22 110.2 79 75.9
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.5e-20 104.4 57 84.2
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 9.4e-20 102.4 57 82.5
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 6.3e-16 89.7 52 90.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.8e-15 88.2 57 84.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 4.5e-14 83.6 74 63.5
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.0e-13 82.4 52 86.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 44 93.2
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 1.1e-07 62.4 33 97.0


User provided reference genes

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