Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.2e-48 196.1 91 100.0
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.2e-41 171.4 93 84.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 5.4e-41 170.6 93 84.9
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.7e-40 168.3 85 85.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.7e-40 168.3 85 85.9
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 6.0e-40 167.2 78 94.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 6.0e-40 167.2 82 90.2
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.0e-39 166.4 89 84.3
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.3e-39 166.0 84 86.9
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.3e-39 166.0 88 83.0
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.8e-39 165.6 89 82.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.8e-39 165.6 89 79.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.0e-39 164.9 93 82.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 3.0e-39 164.9 94 78.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.9e-39 164.5 84 85.7
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.9e-39 164.5 89 80.9
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 5.1e-39 164.1 89 84.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 5.1e-39 164.1 89 79.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 6.7e-39 163.7 87 82.8
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 6.7e-39 163.7 81 88.9
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 8.7e-39 163.3 91 82.4
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.5e-38 162.5 91 81.3
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.5e-38 162.5 91 81.3
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 3.3e-38 161.4 90 78.9
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.3e-38 161.4 90 83.3
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.3e-38 161.4 95 80.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.3e-38 161.4 91 81.3
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.6e-38 160.6 90 83.3
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.6e-38 159.8 89 80.9
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.3e-37 159.5 89 79.8
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.6e-37 159.1 91 80.2
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.6e-37 159.1 79 86.1
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.6e-37 159.1 85 83.5
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.7e-37 157.9 88 81.8
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 4.8e-37 157.5 91 78.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 6.2e-37 157.1 87 81.6
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 6.2e-37 157.1 83 80.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 6.2e-37 157.1 87 80.5
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 8.1e-37 156.8 90 78.9
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 82.0
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.8e-36 155.6 87 80.5
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.8e-36 155.6 87 74.7
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.4e-36 155.2 81 81.5
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.4e-36 155.2 76 88.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.4e-36 155.2 75 86.7
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.4e-36 155.2 91 76.9
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.4e-36 155.2 87 77.0
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.4e-36 155.2 87 77.0
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.1e-36 154.8 89 78.7
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 4.0e-36 154.5 89 80.9
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 6.9e-36 153.7 88 78.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.2e-35 152.9 88 77.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.2e-35 152.9 77 85.7
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 91 74.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 87 74.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 2.6e-35 151.8 84 81.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.6e-35 151.8 89 74.2
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.6e-35 151.8 85 77.6
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.5e-35 151.0 87 78.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.6e-35 150.2 82 78.0
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 7.6e-35 150.2 84 76.2
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.9e-35 149.8 78 80.8
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.3e-34 149.4 82 79.3
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.3e-34 149.4 90 77.8
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 2.2e-34 148.7 85 74.1
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.8e-34 147.9 95 75.8
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.4e-34 147.1 82 78.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 8.4e-34 146.7 82 76.8
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.1e-33 146.4 86 77.9
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.4e-33 146.0 88 70.5
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 86 77.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.9e-33 145.6 83 75.9
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.9e-33 145.6 82 76.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.9e-33 145.6 79 78.5
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 3.2e-33 144.8 86 76.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.6e-32 142.5 95 72.6
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.5e-30 135.2 82 69.5
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.1e-28 129.8 142 49.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.0e-28 127.9 86 76.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 2.6e-27 125.2 142 46.5
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 8.2e-21 103.6 80 57.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.1e-20 103.2 191 34.6
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.1e-17 93.2 43 90.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.4e-17 92.8 42 92.9
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.0e-15 86.7 41 90.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.3e-15 85.5 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 8.8e-15 83.6 42 81.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 1.1e-14 83.2 52 75.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 3.3e-14 81.6 52 75.0
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.3e-14 81.6 50 72.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 5.3e-12 74.3 50 64.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.9e-11 70.9 32 96.9
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.9e-11 70.9 40 72.5
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.5e-09 65.5 81 39.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.2e-09 65.1 44 68.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 7.2e-09 63.9 86 38.4
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.2e-08 63.2 87 36.8
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.2e-08 63.2 86 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 38.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 39.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.6e-08 62.8 86 38.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 40.5
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.1e-08 62.4 90 37.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.1e-08 62.4 79 39.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 2.7e-08 62.0 79 38.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 38.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.6e-08 61.6 79 38.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.6e-08 61.6 82 37.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 38.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 38.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 36.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 38.0
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 38.0
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.7e-08 61.2 79 38.0
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 36.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 38.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.1e-08 60.8 79 38.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 7.9e-08 60.5 77 36.4
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 7.9e-08 60.5 79 36.7
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 7.9e-08 60.5 87 35.6
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 36.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 38.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 36.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.8e-07 59.3 77 37.7
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 35.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 35.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 2.3e-07 58.9 87 34.5
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 3.0e-07 58.5 87 35.6
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.0e-07 58.5 87 34.5
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.0e-07 58.5 79 36.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 3.9e-07 58.2 90 33.3
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 3.9e-07 58.2 77 35.1
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.9e-07 58.2 79 36.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.9e-07 58.2 87 34.5
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.9e-07 58.2 87 34.5
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 3.9e-07 58.2 79 36.7
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.9e-07 58.2 92 31.5
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 3.9e-07 58.2 92 31.5
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 3.9e-07 58.2 79 35.4
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.9e-07 58.2 79 35.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.1e-07 57.8 83 36.1
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.1e-07 57.8 79 36.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 5.1e-07 57.8 83 36.1
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 5.1e-07 57.8 83 34.9
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 5.1e-07 57.8 83 36.1
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 8.8e-07 57.0 86 33.7
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 8.8e-07 57.0 95 35.8
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 36.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.1e-06 56.6 86 33.7
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 32.9
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.1e-06 56.6 92 31.5
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.5e-06 56.2 101 32.7
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 2.0e-06 55.8 79 34.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.0e-06 55.8 91 31.9
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 2.6e-06 55.5 79 36.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.3e-06 55.1 79 34.2
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 3.3e-06 55.1 77 35.1
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.7e-06 54.3 79 34.2
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 5.7e-06 54.3 86 34.9
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.7e-06 54.3 83 33.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 5.7e-06 54.3 88 34.1
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 9.7e-06 53.5 101 30.7


User provided reference genes

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