Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384481 Rosa chinensis HOM05D008311 ORTHO05D010526 6.5e-160 567.4 295 100.0
FAN10G1178 Fragaria x ananassa HOM05D008311 ORTHO05D010526 6.1e-134 481.1 312 81.4
Haze_00388 Corylus avellana HOM05D008311 ORTHO05D010526 8.3e-115 417.5 312 70.2
MD07G1310100 Malus domestica HOM05D008311 ORTHO05D010526 3.1e-114 415.6 312 72.8
FAN03G2372 Fragaria x ananassa HOM05D008311 ORTHO05D010526 2.0e-113 412.9 302 74.2
TAR629G0038 Trochodendron aralioides HOM05D008311 ORTHO05D010526 4.3e-111 405.2 312 67.0
Actinidia08755 Actinidia chinensis HOM05D008311 ORTHO05D010526 6.1e-110 401.4 312 66.7
Prupe.2G328000 Prunus persica HOM05D008311 ORTHO05D010526 1.4e-109 400.2 313 70.0
Cfa016060 Carpinus fangiana HOM05D008311 ORTHO05D010526 1.2e-108 397.1 312 68.3
GSVIVG01024350001 Vitis vinifera HOM05D008311 ORTHO05D010526 1.4e-106 390.2 312 66.0
Aqoxy4G02584 Aquilegia oxysepala HOM05D008311 ORTHO05D010526 1.2e-102 377.1 311 63.3
Ciclev10020460m.g Citrus clementina HOM05D008311 ORTHO05D010526 2.6e-100 369.4 312 63.8
Thecc.05G218800 Theobroma cacao HOM05D008311 ORTHO05D010526 1.3e-99 367.1 312 62.8
Nn3g20131 Nelumbo nucifera HOM05D008311 ORTHO05D010526 3.7e-99 365.5 312 60.6
Manes.09G128000 Manihot esculenta HOM05D008311 ORTHO05D010526 8.3e-99 364.4 312 62.5
Gohir.A08G221662 Gossypium hirsutum HOM05D008311 ORTHO05D010526 5.4e-98 361.7 312 62.5
MBI04_g20345_MAGBIO Magnolia biondii HOM05D008311 ORTHO05D010526 1.6e-97 360.1 315 61.9
Dinv29140 Davidia involucrata HOM05D008311 ORTHO05D010526 3.5e-97 359.0 287 66.6
Sed0001927 Sechium edule HOM05D008311 ORTHO05D010526 1.7e-96 356.7 313 61.3
QL09p022981 Quercus lobata HOM05D008311 ORTHO05D010526 8.6e-96 354.4 395 52.7
Duzib128G1797 Durio zibethinus HOM05D008311 ORTHO05D010526 1.6e-94 350.1 313 61.0
Gohir.D08G241300 Gossypium hirsutum HOM05D008311 ORTHO05D010526 3.1e-93 345.9 313 61.0
Gorai.004G256700 Gossypium raimondii HOM05D008311 ORTHO05D010526 3.1e-93 345.9 313 60.7
Eucgr.A02984 Eucalyptus grandis HOM05D008311 ORTHO05D010526 7.5e-92 341.3 312 58.7
ClCG09G017160 Citrullus lanatus HOM05D008311 ORTHO05D010526 2.9e-91 339.3 314 58.3
DCAR_020420 Daucus carota HOM05D008311 ORTHO05D010526 2.4e-90 336.3 312 58.0
CsaV3_2G036620 Cucumis sativus L. HOM05D008311 ORTHO05D010526 5.4e-90 335.1 314 58.9
CDE11G1038 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 6.2e-86 321.6 315 54.0
AUR62028199 Chenopodium quinoa HOM05D008311 ORTHO05D010526 2.4e-85 319.7 315 54.6
ATR0665G332 Amborella trichopoda HOM05D008311 ORTHO05D010526 1.2e-84 317.4 320 55.9
MELO3C021863.2 Cucumis melo HOM05D008311 ORTHO05D010526 9.9e-84 314.3 292 58.9
CiPaw.05G215000 Carya illinoinensis HOM05D008311 ORTHO05D010526 2.2e-83 313.2 245 68.2
Atru.chr12.1923 Acer truncatum HOM05D008311 ORTHO05D010526 4.9e-83 312.0 292 59.6
COL.COLO4_15199 Corchorus olitorius HOM05D008311 ORTHO05D010526 1.7e-80 303.5 315 54.9
vmacro06529 Vaccinium macrocarpon HOM05D008311 ORTHO05D010526 5.1e-80 302.0 299 54.5
AUR62002082 Chenopodium quinoa HOM05D008311 ORTHO05D010526 1.1e-77 294.3 290 54.8
CDE11G1017 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 6.9e-77 291.6 315 48.9
EL10Ac3g05056 Beta vulgaris HOM05D008311 ORTHO05D010526 2.6e-76 289.7 293 51.9
Lj3A885T48 Lonicera japonica HOM05D008311 ORTHO05D010526 5.1e-72 275.4 260 59.2
Zm00001eb429910 Zea mays HOM05D008311 ORTHO05D010526 9.6e-71 271.2 319 46.7
Lsat_1_v5_gn_8_108920 Lactuca sativa HOM05D008311 ORTHO05D010526 1.3e-70 270.8 319 48.9
THA.LOC104821739 Tarenaya hassleriana HOM05D008311 ORTHO05D010526 6.2e-70 268.5 277 54.5
HPP92_005385 Vanilla planifolia HOM05D008311 ORTHO05D010526 1.4e-69 267.3 318 48.4
HPP92_009011 Vanilla planifolia HOM05D008311 ORTHO05D010526 2.2e-67 260.0 320 45.9
Os04g0592500 Oryza sativa ssp. japonica HOM05D008311 ORTHO05D010526 1.6e-62 243.8 299 47.5
Zm00001eb201380 Zea mays HOM05D008311 ORTHO05D010526 3.1e-61 239.6 294 44.9
AagrBONN_evm.TU.Sc2ySwM_117.4008 Anthoceros agrestis HOM05D008311 ORTHO05D010526 6.7e-56 221.9 315 44.8
Pp3c16_5410 Physcomitrium patens HOM05D008311 ORTHO05D010526 1.3e-54 217.6 316 40.8
SEGI_24543 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 1.2e-52 211.1 261 45.6
Zm00001eb341760 Zea mays HOM05D008311 ORTHO05D010526 9.3e-50 201.4 261 41.8
SEGI_38800 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 4.1e-29 132.9 127 52.8
CSS0045669 Camellia sinensis var. sinensis HOM05D008311 ORTHO05D010526 1.5e-28 131.0 100 64.0
SEGI_19325 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 8.3e-14 82.0 133 39.1
Zm00001eb072300 Zea mays HOM05D008311 ORTHO05D010526 4.5e-12 76.3 105 42.9
Dinv07670 Davidia involucrata HOM05D008311 ORTHO05D183374 1.0e-11 75.1 51 74.5
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.7e-11 74.3 61 59.0
Potri.013G079301 Populus trichocarpa HOM05D008311 ORTHO05D010526 2.5e-10 70.5 62 56.5
SEGI_12661 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 1.2e-09 68.2 58 62.1
Zm00001eb207330 Zea mays HOM05D008311 ORTHO05D010526 1.5e-07 61.2 137 35.8


User provided reference genes

Program Settings