Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384421 Rosa chinensis HOM05D009166 ORTHO05D000001 5.8e-52 207.2 100 100.0
RcHm_v2.0_Chr2g0141981 Rosa chinensis HOM05D000002 ORTHO05D000001 5.6e-39 164.1 99 79.8
RcHm_v2.0_Chr1g0337711 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-36 155.2 99 74.7
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-34 149.1 99 71.7
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 5.1e-32 141.0 85 77.6
RcHm_v2.0_Chr6g0256871 Rosa chinensis HOM05D009166 ORTHO05D000001 2.1e-30 135.6 90 71.1
RcHm_v2.0_Chr1g0339131 Rosa chinensis HOM05D000002 ORTHO05D000001 4.8e-30 134.4 84 73.8
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-26 122.5 97 59.8
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-25 117.9 84 63.1
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 6.2e-22 107.5 82 59.8
RcHm_v2.0_Chr1g0347771 Rosa chinensis HOM05D000002 ORTHO05D000001 8.1e-22 107.1 98 53.1
RcHm_v2.0_Chr7g0178931 Rosa chinensis HOM05D000002 ORTHO05D000001 7.6e-20 100.5 101 49.5
FvH4_5g38691 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-17 93.2 66 62.1
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 2.8e-14 82.0 99 35.4
RcHm_v2.0_Chr1g0355351 Rosa chinensis HOM05D000287 ORTHO05D000001 3.7e-14 81.6 80 47.5
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 2.4e-13 79.0 106 36.8
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-12 75.9 97 34.0
RcHm_v2.0_Chr6g0299971 Rosa chinensis HOM05D000002 ORTHO05D000001 3.4e-12 75.1 67 50.7
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-11 73.6 97 32.0
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-11 72.8 92 37.0
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 1.7e-11 72.8 97 34.0
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-09 66.6 92 32.6
Sabra05G0021700 Salix brachista HOM05D000002 ORTHO05D000001 1.2e-09 66.6 84 38.1
CSS0007133 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-09 65.5 81 40.7
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-09 65.5 93 33.3
Rhsim05G0076500 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.0e-09 64.3 90 35.6
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 1.0e-08 63.5 89 31.5
Rhsim07G0113600 Rhododendron simsii HOM05D009466 ORTHO05D000001 3.9e-08 61.6 90 33.3
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 3.9e-08 61.6 86 33.7
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 3.9e-08 61.6 79 36.7
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.1e-08 61.2 84 29.8
RcHm_v2.0_Chr5g0012631 Rosa chinensis HOM05D013433 ORTHO05D000001 5.1e-08 61.2 90 28.9
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.7e-08 60.8 87 28.7
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 8.7e-08 60.5 89 29.2
Sed0010177 Sechium edule HOM05D000002 ORTHO05D000001 1.1e-07 60.1 91 33.0
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 1.5e-07 59.7 85 27.1
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.5e-07 59.7 93 26.9
FvH4_3g17262 Fragaria vesca HOM05D000002 ORTHO05D000001 1.9e-07 59.3 82 31.7
CSS0011881 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-07 58.9 81 37.0
Dinv05898 Davidia involucrata HOM05D013570 ORTHO05D000001 2.5e-07 58.9 91 29.7
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.5e-07 58.9 96 30.2
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-07 58.9 98 27.6
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 4.3e-07 58.2 92 29.3
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.3e-07 58.2 97 34.0
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-07 58.2 91 33.0
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-07 58.2 84 34.5
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-07 58.2 84 34.5
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 5.7e-07 57.8 93 28.0
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 5.7e-07 57.8 94 29.8
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 5.7e-07 57.8 98 28.6
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-06 56.6 92 30.4
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 1.3e-06 56.6 84 34.5
SHI23044 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 56.6 96 34.4
MD16G1163700 Malus domestica HOM05D009166 ORTHO05D000001 1.6e-06 56.2 87 35.6
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-06 56.2 95 29.5
RcHm_v2.0_Chr7g0203981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-06 56.2 98 28.6
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.6e-06 56.2 87 31.0
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 95 31.6
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-06 55.8 94 30.9
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-06 55.8 94 30.9
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.1e-06 55.8 92 30.4
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 61 39.3
RcHm_v2.0_Chr5g0083071 Rosa chinensis HOM05D000002 ORTHO05D000001 2.1e-06 55.8 31 83.9
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.8e-06 55.5 85 31.8
COL.COLO4_06456 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.8e-06 55.5 77 31.2
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 2.8e-06 55.5 80 36.2
Sopen02g012310 Solanum pennellii HOM05D000004 ORTHO05D000002 2.8e-06 55.5 86 30.2
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 3.7e-06 55.1 102 26.5
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.7e-06 55.1 96 29.2
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 3.7e-06 55.1 87 33.3
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.7e-06 55.1 84 35.7
Atru.chr1.1128 Acer truncatum HOM05D000002 ORTHO05D000001 4.8e-06 54.7 75 37.3
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 4.8e-06 54.7 75 36.0
Dinv10726 Davidia involucrata HOM05D000097 ORTHO05D000041 4.8e-06 54.7 88 28.4
Hma1.2p1_0660F.1_g197730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.8e-06 54.7 75 37.3
FvH4_1g15351 Fragaria vesca HOM05D000002 ORTHO05D000001 6.2e-06 54.3 85 30.6
Nn1g01357 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.2e-06 54.3 83 30.1
Oeu003487.1 Olea europaea HOM05D000002 ORTHO05D000001 6.2e-06 54.3 84 29.8
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.2e-06 53.9 81 33.3
RcHm_v2.0_Chr5g0017791 Rosa chinensis HOM05D016059 ORTHO05D000001 8.2e-06 53.9 86 27.9
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 8.2e-06 53.9 79 32.9
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 8.2e-06 53.9 93 25.8


User provided reference genes

Program Settings