Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 2.0e-86 322.4 166 100.0
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.5e-81 306.2 166 96.4
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.4e-74 283.1 166 88.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.8e-74 280.8 166 88.0
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.6e-73 278.9 166 88.0
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-73 278.5 166 88.0
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-73 278.5 166 88.0
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.5e-73 277.3 165 87.3
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.7e-72 276.2 166 86.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.7e-56 223.0 164 72.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 9.6e-52 207.2 164 67.1
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 2.5e-44 182.6 174 61.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 4.0e-42 175.3 173 58.4
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 2.0e-41 172.9 172 58.7
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 9.9e-41 170.6 168 56.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.9e-40 168.3 181 55.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-39 166.4 159 57.2
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.1e-39 164.5 159 56.6
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 6.0e-38 161.4 166 56.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.3e-37 159.5 184 52.7
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.9e-37 158.7 169 55.6
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 3.3e-36 155.6 169 55.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.6e-36 154.1 158 55.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 9.6e-36 154.1 161 57.8
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.8e-35 151.8 162 57.4
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 8.1e-35 151.0 170 54.7
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-34 150.2 162 56.8
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.0e-33 146.4 168 56.0
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.3e-32 143.7 160 53.8
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.3e-32 143.7 163 54.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.8e-32 142.1 159 56.0
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 6.5e-32 141.4 178 49.4
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.9e-31 139.8 157 53.5
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 9.3e-31 137.5 185 50.3
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.6e-30 136.7 169 49.7
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 2.1e-30 136.3 159 50.3
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.0e-30 134.8 164 52.4
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 6.0e-30 134.8 161 50.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.0e-29 134.0 168 50.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.0e-29 132.5 162 51.2
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 3.0e-29 132.5 161 48.4
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 3.9e-29 132.1 157 49.7
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 8.7e-29 131.0 156 50.0
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.5e-28 130.2 165 52.1
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.9e-28 129.8 166 51.8
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.5e-28 129.4 162 52.5
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.3e-28 129.0 164 51.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.6e-27 126.7 155 52.9
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 2.4e-26 122.9 164 45.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 4.0e-26 122.1 175 44.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.0e-26 122.1 162 46.9
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.9e-26 121.3 161 47.2
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 9.0e-26 120.9 167 46.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 9.0e-26 120.9 159 50.3
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.4e-25 119.0 164 44.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 5.8e-25 118.2 161 46.6
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 7.6e-25 117.9 166 45.8
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-24 116.7 161 44.7
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.7e-24 116.7 164 43.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-24 116.7 164 43.9
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 8.4e-24 114.4 155 48.4
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.5e-23 112.8 164 44.5
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 7.1e-23 111.3 171 44.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.2e-22 110.5 132 50.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.5e-22 109.0 132 50.8
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 6.1e-22 108.2 173 42.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.9e-22 107.8 158 45.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.0e-21 107.5 173 43.4
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 8.7e-21 104.4 153 43.1
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 8.7e-21 104.4 170 42.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.9e-20 103.2 164 43.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 1.9e-20 103.2 161 40.4
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.5e-20 102.8 158 43.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.4e-20 101.3 169 37.3
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 7.4e-20 101.3 169 37.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.3e-19 100.5 156 45.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.8e-19 99.4 172 41.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.7e-19 99.0 152 48.0
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 4.8e-19 98.6 149 43.0
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.2e-19 97.8 150 41.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 3.1e-18 95.9 156 39.1
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-17 94.0 159 42.8
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.2e-17 94.0 159 42.8
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.6e-17 92.8 157 42.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.5e-17 92.0 162 43.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 5.9e-17 91.7 159 39.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 7.7e-17 91.3 156 43.6
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.7e-16 90.1 156 37.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 1.7e-16 90.1 157 40.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.0e-16 88.6 158 36.1
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.1e-15 87.4 122 48.4
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.4e-15 87.0 168 40.5
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.9e-15 86.7 75 58.7
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.2e-15 85.9 160 38.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 7.2e-15 84.7 157 36.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 9.4e-15 84.3 163 40.5
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.6e-14 83.6 160 37.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.7e-14 82.8 166 42.8
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.7e-14 82.8 159 42.1
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 4.6e-14 82.0 156 40.4
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.1e-14 81.6 172 36.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.8e-13 80.1 156 41.7
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.8e-13 80.1 147 42.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 3.0e-13 79.3 160 40.6
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.9e-13 79.0 155 37.4
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 6.7e-13 78.2 153 40.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 9.7e-12 74.3 158 34.2
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.7e-11 73.6 152 40.8
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.7e-11 73.6 155 38.7
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 6.3e-11 71.6 164 36.0
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 6.3e-11 71.6 153 35.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.8e-10 70.1 152 38.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-10 69.3 149 33.6
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 5.3e-10 68.6 162 36.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 5.3e-10 68.6 162 36.4
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.6e-09 66.2 103 39.8
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 4.5e-09 65.5 157 35.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 1.3e-08 63.9 172 35.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.9e-08 62.8 71 43.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 6.5e-08 61.6 159 34.6
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 6.5e-08 61.6 95 38.9
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.5e-08 61.6 97 37.1
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.5e-08 61.6 97 37.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 8.5e-08 61.2 163 36.2
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.5e-08 61.2 105 36.2
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.1e-07 60.8 153 36.6
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.9e-07 60.1 160 35.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 9.4e-07 57.8 176 31.8
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 9.4e-07 57.8 162 31.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 9.4e-07 57.8 128 34.4
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-06 57.4 95 36.8
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.1e-06 56.6 159 34.0
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.6e-06 55.8 155 34.8
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.6e-06 55.8 155 33.5


User provided reference genes

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