Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384211 Rosa chinensis HOM05D006678 ORTHO05D008388 6.9e-56 220.3 105 100.0
FvH4_7g33980 Fragaria vesca HOM05D006678 ORTHO05D008388 4.8e-49 197.6 105 89.5
FAN10G1380 Fragaria x ananassa HOM05D006678 ORTHO05D008388 6.3e-49 197.2 105 89.5
FAN03G1679 Fragaria x ananassa HOM05D006678 ORTHO05D008388 5.3e-48 194.1 105 88.6
FAN01G1466 Fragaria x ananassa HOM05D006678 ORTHO05D008388 1.2e-47 193.0 105 88.6
Prupe.2G326100 Prunus persica HOM05D006678 ORTHO05D008388 3.4e-47 191.4 104 88.5
MD01G1236000 Malus domestica HOM05D006678 ORTHO05D008388 5.0e-46 187.6 105 85.7
Glyma.12G017800 Glycine max HOM05D006678 ORTHO05D008388 2.7e-44 181.8 105 81.9
Psat7g171800 Pisum sativum HOM05D006678 ORTHO05D008388 2.7e-44 181.8 106 81.1
VMungo1127G1968 Vigna mungo HOM05D006678 ORTHO05D008388 4.6e-44 181.0 105 81.0
Ca_04918_v3 Cicer arietinum L. HOM05D006678 ORTHO05D008388 6.1e-44 180.6 106 79.2
Duzib177G0619 Durio zibethinus HOM05D006678 ORTHO05D008388 6.1e-44 180.6 103 84.5
Glyma.11G091800 Glycine max HOM05D006678 ORTHO05D008388 6.1e-44 180.6 106 81.1
Thecc.05G213400 Theobroma cacao HOM05D006678 ORTHO05D008388 6.1e-44 180.6 103 85.4
TPR.G27187 Trifolium pratense HOM05D006678 ORTHO05D008388 6.1e-44 180.6 106 81.1
Medtr4g077807 Medicago truncatula HOM05D006678 ORTHO05D008388 1.4e-43 179.5 106 80.2
Manes.09G127100 Manihot esculenta HOM05D006678 ORTHO05D008388 2.3e-43 178.7 105 81.9
Phvul.011G020300 Phaseolus vulgaris HOM05D006678 ORTHO05D008388 3.0e-43 178.3 105 80.0
Gohir.A13G156100 Gossypium hirsutum HOM05D006678 ORTHO05D008388 5.1e-43 177.6 103 83.5
Gohir.D13G161000 Gossypium hirsutum HOM05D006678 ORTHO05D008388 8.8e-43 176.8 103 83.5
Gorai.013G181600 Gossypium raimondii HOM05D006678 ORTHO05D008388 8.8e-43 176.8 103 83.5
Atru.chr12.1964 Acer truncatum HOM05D006678 ORTHO05D008388 2.0e-42 175.6 106 82.1
Ciclev10023015m.g Citrus clementina HOM05D006678 ORTHO05D008388 2.0e-42 175.6 105 83.8
CiPaw.06G032600 Carya illinoinensis HOM05D006678 ORTHO05D008388 2.5e-42 175.3 105 78.1
Duzib106G0454 Durio zibethinus HOM05D006678 ORTHO05D008388 2.5e-42 175.3 103 82.5
CANSAT21G1467 Cannabis sativa HOM05D006678 ORTHO05D008388 4.3e-42 174.5 105 77.1
Potri.013G082100 Populus trichocarpa HOM05D006678 ORTHO05D008388 4.3e-42 174.5 110 75.5
MELO3C024729.2 Cucumis melo HOM05D006678 ORTHO05D008388 1.3e-41 172.9 105 79.0
TWI38G1314 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 2.2e-41 172.2 105 78.1
ClCG02G007680 Citrullus lanatus HOM05D006678 ORTHO05D008388 2.8e-41 171.8 105 78.1
TWI39G0757 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 2.8e-41 171.8 105 77.1
TAR629G1392 Trochodendron aralioides HOM05D006678 ORTHO05D008388 2.8e-41 171.8 106 79.2
COL.COLO4_11805 Corchorus olitorius HOM05D006678 ORTHO05D008388 3.7e-41 171.4 103 80.6
Lj3g0002487 Lotus japonicus HOM05D006678 ORTHO05D008388 3.7e-41 171.4 114 74.6
Nn1g01909 Nelumbo nucifera HOM05D006678 ORTHO05D008388 3.7e-41 171.4 105 76.2
THA.LOC104802920 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 3.7e-41 171.4 105 78.1
THA.LOC104827215 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 3.7e-41 171.4 105 78.1
QL09p024031 Quercus lobata HOM05D006678 ORTHO05D008388 4.8e-41 171.0 104 78.8
GSVIVG01024408001 Vitis vinifera HOM05D006678 ORTHO05D008388 8.2e-41 170.2 105 77.1
PSO063G3868 Papaver somniferum HOM05D006678 ORTHO05D008388 1.1e-40 169.9 105 79.0
Lalb_Chr03g0024411 Lupinus albus HOM05D006678 ORTHO05D008388 1.4e-40 169.5 105 77.1
Sabra13G0070800 Salix brachista HOM05D006678 ORTHO05D008388 1.4e-40 169.5 113 73.5
arahy.Tifrunner.gnm1.ann1.Z69A25 Arachis hypogaea HOM05D006678 ORTHO05D008388 1.8e-40 169.1 106 76.4
Lalb_Chr01g0000921 Lupinus albus HOM05D006678 ORTHO05D008388 3.1e-40 168.3 103 76.7
PSO782G5154 Papaver somniferum HOM05D006678 ORTHO05D008388 3.1e-40 168.3 105 78.1
PGR042G1336 Punica granatum HOM05D006678 ORTHO05D008388 3.1e-40 168.3 112 75.9
CsaV3_2G036030 Cucumis sativus L. HOM05D006678 ORTHO05D008388 4.1e-40 167.9 105 77.1
Sed0006085 Sechium edule HOM05D006678 ORTHO05D008388 3.4e-39 164.9 106 76.4
Aqoxy3G02158 Aquilegia oxysepala HOM05D006678 ORTHO05D008388 5.0e-38 161.0 76 94.7
Aa31LG5G13550 Aethionema arabicum HOM05D006678 ORTHO05D008388 6.5e-38 160.6 113 69.0
Thhalv10021803m.g Eutrema salsugineum HOM05D006678 ORTHO05D008388 6.5e-38 160.6 113 69.0
CARHR077080 Cardamine hirsuta HOM05D006678 ORTHO05D008388 8.5e-38 160.2 113 69.0
AT3G03070 Arabidopsis thaliana HOM05D006678 ORTHO05D008388 1.1e-37 159.8 113 69.0
Oeu031704.1 Olea europaea HOM05D006678 ORTHO05D008388 1.1e-37 159.8 109 75.2
HanXRQChr03g0088421 Helianthus annuus HOM05D006678 ORTHO05D008388 1.9e-37 159.1 107 74.8
AL3G12580 Arabidopsis lyrata HOM05D006678 ORTHO05D008388 2.5e-37 158.7 113 68.1
Carub.0003s0222 Capsella rubella HOM05D006678 ORTHO05D008388 4.2e-37 157.9 113 68.1
Sp3g02110 Schrenkiella parvula HOM05D006678 ORTHO05D008388 4.2e-37 157.9 114 67.5
Peaxi162Scf00133g00723 Petunia axillaris HOM05D006678 ORTHO05D008388 7.2e-37 157.1 108 71.3
BcaB04g21385 Brassica carinata HOM05D006678 ORTHO05D008388 1.2e-36 156.4 113 69.9
Actinidia18705 Actinidia chinensis HOM05D006678 ORTHO05D008388 1.6e-36 156.0 104 70.2
Lsat_1_v5_gn_9_47480 Lactuca sativa HOM05D006678 ORTHO05D008388 2.7e-36 155.2 107 72.9
Nitab4.5_0011186g0030 Nicotiana tabacum HOM05D006678 ORTHO05D008388 3.6e-36 154.8 107 71.0
Actinidia34306 Actinidia chinensis HOM05D006678 ORTHO05D008388 4.7e-36 154.5 106 70.8
Nitab4.5_0000021g0500 Nicotiana tabacum HOM05D006678 ORTHO05D008388 6.1e-36 154.1 107 70.1
Hund09791 Selenicereus undatus HOM05D006678 ORTHO05D008388 6.1e-36 154.1 106 67.9
BolC5t35043H Brassica oleracea HOM05D006678 ORTHO05D008388 7.9e-36 153.7 115 65.2
Dinv17257 Davidia involucrata HOM05D006678 ORTHO05D008388 7.9e-36 153.7 106 67.9
C05p63740 Brassica napus HOM05D006678 ORTHO05D008388 1.0e-35 153.3 115 66.1
ATR0829G044 Amborella trichopoda HOM05D006678 ORTHO05D008388 1.4e-35 152.9 101 72.3
BNapus_Darmor_BZH_scaffold_129p00040 Brassica napus HOM05D006678 ORTHO05D008388 1.4e-35 152.9 113 68.1
Hma1.2p1_1680F.1_g297200 Hydrangea macrophylla HOM05D006678 ORTHO05D008388 1.4e-35 152.9 108 70.4
Rhsim03G0221400 Rhododendron simsii HOM05D006678 ORTHO05D008388 1.4e-35 152.9 107 67.3
Migut.F00948 Erythranthe guttata HOM05D006678 ORTHO05D008388 1.8e-35 152.5 106 68.9
Gorai.013G182200 Gossypium raimondii HOM05D006678 ORTHO05D008388 1.8e-35 152.5 105 72.4
Solyc03g097010.3 Solanum lycopersicum HOM05D006678 ORTHO05D008388 1.8e-35 152.5 107 72.0
Sopen03g027760 Solanum pennellii HOM05D006678 ORTHO05D008388 1.8e-35 152.5 107 72.0
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 2.3e-35 152.1 102 71.6
DCAR_009010 Daucus carota HOM05D006678 ORTHO05D008388 2.3e-35 152.1 113 68.1
A05p44110 Brassica napus HOM05D006678 ORTHO05D008388 3.0e-35 151.8 115 64.3
BraSC90t46700Z Brassica rapa HOM05D006678 ORTHO05D008388 3.0e-35 151.8 115 64.3
SGA_v2.0_scaffold50G18440 Striga asiatica HOM05D006678 ORTHO05D008388 3.0e-35 151.8 105 68.6
unitig_90.g27534 Utricularia gibba HOM05D006678 ORTHO05D008388 3.0e-35 151.8 105 68.6
MSTRG.26930 Avicennia marina HOM05D006678 ORTHO05D008388 3.9e-35 151.4 106 69.8
BolC1t05850H Brassica oleracea HOM05D006678 ORTHO05D008388 3.9e-35 151.4 113 67.3
BraA01t04595Z Brassica rapa HOM05D006678 ORTHO05D008388 3.9e-35 151.4 113 67.3
CDE06G2089 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 5.1e-35 151.0 101 74.3
Dinv29159 Davidia involucrata HOM05D006678 ORTHO05D008388 8.8e-35 150.2 106 68.9
Cc02_g00280 Coffea canephora HOM05D006678 ORTHO05D008388 1.1e-34 149.8 114 65.8
CSS0031072 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 2.0e-34 149.1 115 65.2
CSS0016806 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 3.3e-34 148.3 74 89.2
SalBow2G2234 Salvia bowleyana HOM05D006678 ORTHO05D008388 2.2e-33 145.6 106 66.0
vmacro06510 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 2.2e-33 145.6 114 62.3
EL10Ac3g05077 Beta vulgaris HOM05D006678 ORTHO05D008388 1.4e-32 142.9 105 66.7
AUR62028176 Chenopodium quinoa HOM05D006678 ORTHO05D008388 7.0e-32 140.6 105 64.8
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 9.1e-32 140.2 66 95.5
AUR62002062 Chenopodium quinoa HOM05D006678 ORTHO05D008388 1.6e-31 139.4 105 64.8
CAN.G1131.11 Capsicum annuum HOM05D006678 ORTHO05D008388 7.7e-31 137.1 85 74.1
Os08g0161700 Oryza sativa ssp. japonica HOM05D006678 ORTHO05D008388 7.7e-31 137.1 106 62.3
Zm00001eb172200 Zea mays HOM05D006678 ORTHO05D008388 6.5e-30 134.0 105 61.9
Oeu063732.2 Olea europaea HOM05D006678 ORTHO05D008388 1.1e-29 133.3 62 95.2
vmacro22173 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 1.5e-29 132.9 64 93.8
AagrBONN_evm.TU.Sc2ySwM_368.1248 Anthoceros agrestis HOM05D006678 ORTHO05D008388 7.2e-29 130.6 76 72.4
Nitab4.5_0000011g0100 Nicotiana tabacum HOM05D006678 ORTHO05D008388 8.0e-28 127.1 65 87.7
Pp3c24_2620 Physcomitrium patens HOM05D006678 ORTHO05D008388 1.8e-27 125.9 96 62.5
SMO239G0055 Selaginella moellendorffii HOM05D006678 ORTHO05D008388 5.2e-27 124.4 72 72.2
Duzib128G0155 Durio zibethinus HOM05D006678 ORTHO05D008388 8.8e-27 123.6 76 73.7
ECA232G0519 Erigeron canadensis HOM05D006678 ORTHO05D008388 8.8e-27 123.6 96 67.7
SEGI_28569 Sequoiadendron giganteum HOM05D006678 ORTHO05D008388 8.8e-27 123.6 62 88.7
Mapoly0006s0269 Marchantia polymorpha HOM05D006678 ORTHO05D008388 3.3e-26 121.7 73 72.6
Ah.13g072760 Amaranthus hybridus HOM05D006678 ORTHO05D008388 5.3e-24 114.4 65 84.6
Pp3c23_13320 Physcomitrium patens HOM05D006678 ORTHO05D008388 7.7e-23 110.5 73 69.9
Gohir.D13G160300 Gossypium hirsutum HOM05D006678 ORTHO05D008388 1.6e-20 102.8 68 82.4
arahy.Tifrunner.gnm1.ann1.GV73NI Arachis hypogaea HOM05D006678 ORTHO05D008388 5.2e-19 97.8 69 73.9
PRCOL_00006130 Prasinoderma coloniale HOM05D006678 ORTHO05D008388 1.3e-17 93.2 77 59.7
Cre03.g178250 Chlamydomonas reinhardtii HOM05D006678 ORTHO05D008388 4.1e-16 88.2 95 50.5
Sc06g0002530 Simmondsia chinensis HOM05D002239 ORTHO05D002408 3.2e-13 78.6 70 58.6
Zm00001eb415610 Zea mays HOM05D006678 ORTHO05D008388 9.5e-13 77.0 72 54.2
CBR_g6679 Chara braunii HOM05D006678 ORTHO05D008388 2.8e-09 65.5 35 74.3


User provided reference genes

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