Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 3.6e-54 214.9 129 100.0
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 2.2e-48 195.7 129 85.3
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.2e-48 195.7 129 85.3
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.2e-48 195.7 129 85.3
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 2.0e-44 182.6 131 88.5
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 7.2e-31 137.5 104 76.9
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 7.2e-31 137.5 125 64.8
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 1.5e-28 129.8 129 56.6
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 1.3e-27 126.7 126 61.9
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 2.8e-27 125.6 129 58.1
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 8.3e-27 124.0 133 64.7
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 1.4e-26 123.2 131 57.3
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 1.8e-26 122.9 129 55.0
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 4.1e-26 121.7 129 56.6
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 5.4e-26 121.3 134 58.2
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 9.2e-26 120.6 129 62.0
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 9.2e-26 120.6 128 56.2
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 9.2e-26 120.6 128 56.2
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 1.2e-25 120.2 79 79.7
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.6e-25 119.8 132 59.8
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 1.6e-25 119.8 130 57.7
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 2.7e-25 119.0 133 56.4
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 2.7e-25 119.0 132 54.5
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 5.9e-25 117.9 104 64.4
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 5.9e-25 117.9 134 56.0
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 5.9e-25 117.9 129 55.8
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 7.8e-25 117.5 129 55.0
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 1.3e-24 116.7 129 54.3
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 2.3e-24 115.9 130 54.6
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 2.3e-24 115.9 130 62.3
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 2.3e-24 115.9 130 61.5
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 2.3e-24 115.9 130 65.4
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 2.9e-24 115.5 104 63.5
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 6.6e-24 114.4 129 58.1
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 8.6e-24 114.0 129 53.5
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 8.6e-24 114.0 131 64.9
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 1.1e-23 113.6 100 64.0
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 1.1e-23 113.6 104 61.5
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 1.9e-23 112.8 130 56.9
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 2.5e-23 112.5 90 68.9
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 2.5e-23 112.5 129 50.4
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 2.5e-23 112.5 129 58.1
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 3.3e-23 112.1 102 62.7
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 4.3e-23 111.7 130 53.1
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 4.3e-23 111.7 103 63.1
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 5.6e-23 111.3 134 55.2
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 5.6e-23 111.3 134 55.2
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 7.3e-23 110.9 130 59.2
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 9.5e-23 110.5 132 53.0
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 9.5e-23 110.5 135 55.6
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.2e-22 110.2 81 74.1
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.2e-22 110.2 129 60.5
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 1.6e-22 109.8 89 70.8
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.1e-22 109.4 135 54.8
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.8e-22 109.0 101 62.4
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 2.8e-22 109.0 161 49.1
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 3.6e-22 108.6 129 53.5
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 4.7e-22 108.2 127 57.5
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 4.7e-22 108.2 106 61.3
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 6.1e-22 107.8 103 61.2
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 6.1e-22 107.8 130 60.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 8.0e-22 107.5 129 58.1
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.0e-21 107.1 129 50.4
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.0e-21 107.1 129 50.4
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 1.0e-21 107.1 107 61.7
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 1.0e-21 107.1 100 62.0
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 1.4e-21 106.7 129 51.2
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 1.8e-21 106.3 129 54.3
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 1.8e-21 106.3 132 53.0
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 2.3e-21 105.9 105 63.8
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 4.0e-21 105.1 130 53.8
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 4.0e-21 105.1 104 57.7
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 6.8e-21 104.4 153 47.7
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 1.2e-20 103.6 104 55.8
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 1.2e-20 103.6 104 55.8
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 1.2e-20 103.6 104 55.8
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.2e-20 103.6 76 75.0
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 2.0e-20 102.8 76 76.3
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 2.6e-20 102.4 107 55.1
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 2.6e-20 102.4 130 50.0
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 2.6e-20 102.4 101 57.4
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 2.6e-20 102.4 104 53.8
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.6e-20 102.4 129 48.8
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 5.7e-20 101.3 101 55.4
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 5.7e-20 101.3 104 52.9
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 5.7e-20 101.3 129 53.5
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 7.5e-20 100.9 104 53.8
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 7.5e-20 100.9 104 53.8
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 9.8e-20 100.5 104 53.8
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.3e-19 100.1 101 57.4
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.7e-19 99.8 100 58.0
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.9e-19 99.0 79 68.4
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 2.9e-19 99.0 79 68.4
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 1.1e-18 97.1 129 54.3
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 2.4e-18 95.9 129 54.3
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 4.1e-18 95.1 132 55.3
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 7.0e-18 94.4 101 58.4
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 1.2e-17 93.6 75 64.0
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 1.2e-17 93.6 136 47.8
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 7.8e-17 90.9 140 49.3
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 3.0e-16 89.0 84 57.1
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.9e-16 88.6 76 61.8
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 8.6e-16 87.4 108 48.1
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 1.6e-14 83.2 101 50.5
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 6.8e-13 77.8 70 57.1
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 4.4e-12 75.1 131 40.5
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 1.3e-11 73.6 131 39.7
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 9.2e-10 67.4 82 48.8
Pp3c4_15620 Physcomitrium patens HOM05D007045 ORTHO05D008872 1.5e-07 60.1 67 53.7
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 4.3e-07 58.5 113 38.9
CBR_g50944 Chara braunii HOM05D007045 ORTHO05D008872 3.6e-06 55.5 111 38.7
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 6.2e-06 54.7 108 38.9


User provided reference genes

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