Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.0e-107 392.5 202 100.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 3.2e-57 225.7 152 80.3
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 2.1e-56 223.0 152 78.3
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.1e-56 223.0 152 78.3
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.1e-56 223.0 152 78.3
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.1e-56 223.0 152 78.3
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 2.3e-55 219.5 192 64.1
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 7.3e-54 214.5 192 62.5
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.1e-52 210.7 153 73.2
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 4.0e-52 208.8 192 61.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 5.2e-52 208.4 159 67.9
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.0e-51 206.5 154 69.5
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 3.4e-51 205.7 154 69.5
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 4.4e-51 205.3 194 57.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 5.8e-51 204.9 194 57.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 9.9e-51 204.1 194 57.7
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 9.9e-51 204.1 194 57.7
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.3e-50 203.8 194 57.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.3e-50 203.8 194 57.2
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.3e-50 203.8 194 58.2
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.7e-50 203.4 159 65.4
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.2e-50 203.0 194 57.7
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.9e-50 202.6 152 69.1
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.9e-50 202.6 194 56.7
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.9e-50 202.6 154 68.8
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-50 202.6 194 56.2
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-50 202.6 194 56.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.9e-50 201.8 154 67.5
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 4.9e-50 201.8 206 54.4
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 6.4e-50 201.4 194 57.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 8.3e-50 201.1 194 57.2
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 1.1e-49 200.7 194 55.7
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.1e-49 200.7 194 55.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 1.4e-49 200.3 154 64.9
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.9e-49 199.9 194 56.7
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.9e-49 199.9 155 66.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.9e-49 199.9 192 56.8
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.4e-49 199.5 154 67.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.4e-49 199.5 192 57.3
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.4e-49 199.5 192 57.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 3.2e-49 199.1 154 64.9
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 3.2e-49 199.1 154 64.9
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 4.1e-49 198.7 194 56.2
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.1e-49 198.7 192 56.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.4e-49 198.4 192 56.8
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 5.4e-49 198.4 192 56.8
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 7.1e-49 198.0 154 64.3
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 63.6
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 63.6
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 63.6
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 63.6
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 63.6
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 9.2e-49 197.6 154 68.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.2e-48 197.2 160 64.4
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.2e-48 197.2 194 57.2
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.2e-48 197.2 194 54.6
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-48 197.2 192 55.7
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 1.2e-48 197.2 154 64.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.1e-48 196.4 192 54.7
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.1e-48 196.4 194 54.6
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 2.7e-48 196.1 154 64.9
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 2.7e-48 196.1 154 64.9
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.7e-48 196.1 192 56.2
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.5e-48 195.7 194 55.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.5e-48 195.7 155 64.5
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.6e-48 195.3 155 65.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 6.0e-48 194.9 192 56.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.0e-48 194.9 194 55.7
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 7.8e-48 194.5 154 63.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.8e-48 194.5 194 55.7
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.8e-48 194.5 194 54.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 7.8e-48 194.5 154 63.6
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 7.8e-48 194.5 194 55.7
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.0e-47 194.1 194 55.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.0e-47 194.1 194 54.6
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-47 194.1 194 55.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-47 194.1 159 61.6
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.3e-47 193.7 154 63.6
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.3e-47 193.7 154 63.6
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.3e-47 193.7 154 63.6
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.3e-47 193.7 194 55.2
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.0e-47 192.6 194 54.6
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 3.9e-47 192.2 154 63.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 5.1e-47 191.8 154 63.6
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.1e-46 190.7 194 54.6
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.1e-46 190.7 194 55.7
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.1e-46 190.7 192 56.2
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.1e-46 190.7 194 53.6
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.1e-46 190.7 194 53.6
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.1e-46 190.7 195 53.8
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.9e-46 189.9 159 61.0
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.3e-46 189.1 166 59.6
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.3e-46 188.7 154 65.6
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 7.3e-46 188.0 161 60.9
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 7.3e-46 188.0 194 53.1
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.2e-45 187.2 154 63.6
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.1e-45 186.4 199 51.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.1e-45 186.4 167 61.1
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.4e-44 183.0 166 57.8
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.2e-44 181.8 154 63.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 5.2e-44 181.8 154 63.6
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 8.9e-44 181.0 241 45.2
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.0e-43 179.9 173 58.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 4.4e-43 178.7 225 48.0
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.3e-42 177.2 213 50.2
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.7e-42 176.8 154 57.1
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.4e-41 172.9 154 59.7
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-39 166.8 174 55.2
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 1.1e-38 164.1 128 65.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.9e-38 163.3 192 49.0
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 4.8e-37 158.7 196 48.5
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.1e-36 157.5 211 49.3
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 3.3e-30 136.0 127 56.7
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.1e-29 131.3 144 56.2
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 8.1e-29 131.3 144 56.2
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.6e-27 126.3 123 52.8
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.7e-26 123.6 90 68.9
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 3.8e-26 122.5 182 39.0
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.9e-25 120.2 81 69.1
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 5.1e-23 112.1 92 66.3
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.2e-19 100.9 173 39.9
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.5e-19 100.5 152 42.8
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 2.9e-18 96.3 164 32.9
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.2e-17 92.8 62 71.0
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.7e-16 89.7 169 32.5
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.1e-14 84.3 74 63.5
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 3.3e-14 82.8 109 47.7
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 8.2e-13 78.2 137 37.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.8e-10 69.3 51 64.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.9e-09 67.0 236 24.6
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.9e-07 59.3 57 54.4


User provided reference genes

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