Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 5.2e-145 517.7 260 100.0
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.4e-126 456.4 260 91.2
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 2.4e-126 455.7 260 91.2
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.7e-125 452.2 260 90.8
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.6e-125 451.4 260 90.8
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.7e-124 449.5 260 90.4
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 7.1e-102 374.4 260 78.1
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 7.6e-96 354.4 223 77.1
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.9e-95 352.4 228 75.9
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 6.4e-95 351.3 262 73.7
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 1.4e-94 350.1 266 69.9
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 3.2e-94 349.0 261 75.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.2e-94 348.6 228 75.0
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 4.2e-94 348.6 228 75.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 9.3e-94 347.4 230 73.5
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-93 346.7 228 74.6
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 4.6e-93 345.1 229 74.7
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.0e-92 342.4 234 71.4
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.5e-91 339.3 232 71.6
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.3e-91 339.0 260 67.3
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.1e-90 336.3 223 71.3
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 3.7e-90 335.5 223 72.6
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 6.2e-90 334.7 232 69.0
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 8.1e-90 334.3 223 74.0
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 1.4e-89 333.6 243 68.3
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 3.1e-89 332.4 231 71.4
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 5.3e-89 331.6 220 72.3
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 5.3e-89 331.6 238 70.6
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 5.3e-89 331.6 222 72.1
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 6.9e-89 331.3 240 68.8
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 6.9e-89 331.3 220 72.7
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.5e-88 330.1 230 70.4
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 2.6e-88 329.3 222 73.0
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.4e-88 328.9 232 69.8
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.5e-88 328.6 230 70.0
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 3.8e-87 325.5 223 69.5
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.8e-87 325.5 239 67.4
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.1e-86 323.9 217 71.9
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.4e-86 323.6 224 71.4
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 3.2e-86 322.4 218 70.6
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 4.2e-86 322.0 253 61.7
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 1.2e-85 320.5 225 68.0
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.2e-85 320.5 230 68.7
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.1e-85 319.7 224 71.0
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 2.7e-85 319.3 203 75.4
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.0e-84 317.4 218 71.1
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.8e-84 316.6 203 75.9
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 2.3e-84 316.2 247 68.8
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 6.7e-84 314.7 219 69.4
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 6.7e-84 314.7 219 69.4
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.1e-83 313.9 224 66.1
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.5e-83 313.5 218 69.7
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.5e-83 312.8 261 62.5
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 4.3e-83 312.0 247 64.0
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 4.3e-83 312.0 222 67.6
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 5.6e-83 311.6 236 66.5
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 9.6e-83 310.8 247 65.2
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.8e-82 309.3 231 68.4
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 4.8e-82 308.5 204 75.0
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 2.4e-81 306.2 222 69.4
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 5.3e-81 305.1 236 64.4
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 6.9e-81 304.7 228 62.3
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 4.5e-80 302.0 220 66.8
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 5.8e-80 301.6 220 67.3
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 7.6e-80 301.2 197 71.1
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.0e-79 300.8 218 63.8
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.0e-79 300.8 225 65.8
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.3e-79 300.4 221 65.2
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.9e-79 299.3 284 57.0
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 3.8e-79 298.9 197 73.1
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 8.4e-79 297.7 299 52.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.1e-78 297.4 264 56.4
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 1.4e-78 297.0 249 63.1
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.5e-78 296.2 251 61.0
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 4.2e-78 295.4 224 65.2
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.5e-77 292.4 233 63.5
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 6.0e-77 291.6 234 63.2
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.3e-76 290.4 223 65.9
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.3e-76 290.4 196 71.4
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.8e-76 290.0 230 63.0
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.8e-76 290.0 212 65.6
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.3e-76 289.7 255 57.6
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.9e-75 286.6 230 62.2
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.3e-75 285.4 269 54.3
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 5.7e-75 285.0 218 62.8
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 7.4e-75 284.6 232 62.5
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 1.3e-74 283.9 268 57.1
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 1.3e-74 283.9 268 57.1
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.3e-74 283.9 268 58.2
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.8e-74 282.7 268 57.8
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 3.7e-74 282.3 224 63.8
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.8e-74 282.0 197 69.0
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 8.2e-74 281.2 197 68.5
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.1e-73 280.8 196 68.9
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 4.1e-73 278.9 229 62.9
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 5.3e-73 278.5 225 59.1
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 6.9e-73 278.1 196 68.4
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 3.4e-72 275.8 233 59.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 4.5e-72 275.4 197 67.5
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 3.8e-71 272.3 165 77.0
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.9e-70 270.0 280 48.6
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.9e-70 270.0 218 60.1
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.2e-70 269.2 225 60.4
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 9.3e-70 267.7 239 55.6
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.3e-68 263.8 218 61.9
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.9e-67 260.0 232 58.6
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 6.3e-66 255.0 228 57.0
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.1e-65 252.7 233 56.2
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 7.4e-59 231.5 226 50.9
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.0e-56 223.4 229 52.0
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 5.9e-56 221.9 219 53.4
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 6.7e-44 181.8 132 68.9
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.0e-35 153.7 189 40.2
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 2.4e-33 146.7 235 33.6
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 4.0e-28 129.4 152 41.4
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 2.7e-24 116.7 84 66.7
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 1.9e-22 110.5 197 34.0
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 6.0e-16 89.0 123 45.5


User provided reference genes

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