Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 6.2e-271 936.8 450 100.0
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.3e-243 843.2 446 90.4
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-242 842.0 446 90.1
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.3e-240 834.7 446 89.2
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 2.8e-231 805.1 444 87.6
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.8e-231 804.3 444 87.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.6e-224 781.9 437 86.3
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 4.7e-202 708.0 441 77.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-189 666.4 441 74.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 6.0e-165 584.7 300 92.3
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 3.9e-156 555.4 459 60.1
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.1e-154 547.7 481 56.8
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 3.4e-152 542.3 463 59.2
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 4.4e-152 542.0 469 58.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 6.4e-151 538.1 439 60.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 7.1e-150 534.6 459 58.6
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 6.6e-148 528.1 448 57.8
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.1e-147 527.3 442 57.7
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.1e-147 527.3 442 57.7
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.3e-146 523.9 459 56.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 6.9e-145 518.1 453 57.4
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.2e-144 517.3 453 57.6
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.4e-144 515.8 452 56.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 4.5e-144 515.4 461 56.2
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.2e-143 513.1 448 56.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.6e-141 506.9 448 57.1
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.1e-139 500.7 454 55.7
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-139 499.6 444 61.9
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.5e-139 499.6 449 56.3
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 3.3e-139 499.2 446 56.3
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 9.6e-139 497.7 455 57.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.1e-138 496.5 439 57.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 4.0e-137 492.3 468 55.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 4.0e-137 492.3 418 57.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.4e-136 489.2 439 56.7
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.4e-136 489.2 457 54.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.1e-134 484.2 423 57.4
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 4.2e-134 482.3 439 56.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 3.5e-133 479.2 452 56.0
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 3.5e-133 479.2 439 56.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 4.6e-133 478.8 458 53.3
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 6.0e-133 478.4 456 53.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.3e-131 472.6 440 55.0
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.3e-131 472.6 440 55.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 5.6e-131 471.9 469 52.5
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.5e-128 462.2 469 52.0
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 8.4e-127 458.0 444 54.1
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 4.2e-126 455.7 453 51.9
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 4.2e-126 455.7 425 53.9
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 9.3e-126 454.5 459 51.0
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 2.7e-125 453.0 454 52.0
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.5e-125 452.6 452 51.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 6.7e-124 448.4 452 52.2
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.9e-123 446.8 455 50.8
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.6e-122 443.7 368 58.7
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.8e-122 443.0 454 51.1
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 4.8e-122 442.2 450 51.1
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.4e-121 439.9 452 50.0
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 3.1e-121 439.5 454 50.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 5.3e-121 438.7 454 51.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 5.3e-121 438.7 452 50.2
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.2e-120 437.6 451 49.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 6.5e-119 431.8 440 50.5
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.1e-118 431.0 448 52.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 3.2e-118 429.5 457 47.5
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.2e-117 427.6 453 47.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.2e-117 427.6 497 46.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 6.1e-117 425.2 453 50.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.4e-116 424.1 453 47.2
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 6.7e-116 421.8 445 48.8
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 3.7e-114 416.0 451 49.0
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 6.3e-114 415.2 394 54.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.4e-113 414.1 375 56.5
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.8e-113 413.7 444 49.3
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.4e-113 413.3 369 56.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 5.3e-113 412.1 436 50.2
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 9.1e-113 411.4 439 48.1
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.0e-112 410.2 368 54.1
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.5e-112 409.1 452 48.0
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.9e-111 406.4 372 55.1
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.6e-109 400.6 459 47.5
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 4.7e-109 399.1 368 53.3
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 6.1e-109 398.7 449 47.9
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 6.7e-108 395.2 385 52.7
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.3e-106 391.0 442 47.1
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.8e-106 389.0 365 51.2
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.1e-105 386.3 445 47.2
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.0e-104 383.6 444 49.1
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.1e-102 377.9 446 45.1
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.4e-102 377.5 475 45.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 3.2e-102 376.3 420 52.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.2e-101 374.4 450 45.6
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.4e-100 370.9 445 46.5
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 3.0e-100 369.8 447 46.3
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.0e-99 367.1 446 44.6
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.3e-99 366.3 444 44.8
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 7.4e-99 365.2 444 46.2
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.1e-97 359.8 368 49.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 7.0e-97 358.6 445 45.4
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 6.5e-95 352.1 446 44.2
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.0e-92 344.7 310 55.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.1e-89 334.7 377 49.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 3.5e-88 329.7 341 51.9
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.7e-85 320.1 535 36.6
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.6e-80 304.3 420 43.1
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 2.7e-80 303.5 453 40.2
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 4.2e-78 296.2 325 48.3
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.2e-77 294.7 553 32.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.0e-76 289.7 437 39.1
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 2.2e-74 283.9 270 53.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.0e-71 275.0 405 39.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.5e-70 270.4 351 44.2
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.2e-68 262.7 421 36.3
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 7.0e-65 252.3 527 31.9
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 5.6e-62 242.7 162 69.1
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.2e-59 235.0 549 29.9
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.5e-59 234.6 350 39.1
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 3.4e-59 233.4 243 50.2
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.6e-56 223.0 377 38.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 5.6e-54 216.1 216 54.2
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 7.8e-48 195.7 571 28.2
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.4e-42 175.6 155 54.2
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-41 175.3 98 82.7
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-41 175.3 157 54.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-40 171.0 134 55.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.7e-40 170.6 157 52.2
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 3.9e-31 140.2 81 84.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.8e-28 131.3 150 46.0
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.4e-28 131.0 217 35.9
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.4e-26 122.9 157 42.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 2.4e-25 120.9 98 56.1
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.6e-13 81.6 58 63.8
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 4.5e-11 73.6 75 48.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.8e-10 70.5 38 81.6
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.1e-08 64.7 52 51.9


User provided reference genes

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