Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 2.2e-157 558.9 287 100.0
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 9.0e-90 334.3 216 80.1
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 7.9e-78 294.7 194 77.3
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.9e-78 294.7 194 77.3
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.9e-78 294.7 194 77.3
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.0e-77 294.3 194 77.3
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.0e-77 292.7 194 76.8
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-75 287.0 156 93.6
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-74 283.9 148 95.9
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.9e-72 276.2 193 70.5
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.6e-70 270.4 194 70.6
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 8.7e-69 264.6 137 93.4
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 2.7e-62 243.0 147 78.2
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 3.1e-58 229.6 197 59.9
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 3.4e-57 226.1 182 62.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 4.5e-57 225.7 189 58.7
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 5.9e-57 225.3 209 56.0
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 5.9e-57 225.3 122 92.6
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.3e-56 224.2 192 57.8
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 2.2e-56 223.4 192 59.9
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 2.2e-56 223.4 224 55.4
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 2.9e-56 223.0 191 59.2
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.9e-56 223.0 191 59.7
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 3.8e-56 222.6 227 52.0
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 3.8e-56 222.6 227 53.7
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 5.0e-56 222.2 209 57.4
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 6.5e-56 221.9 177 61.6
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 1.9e-55 220.3 204 57.8
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 4.2e-55 219.2 122 90.2
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.6e-54 217.2 175 61.1
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.7e-54 216.5 183 61.2
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 2.3e-53 213.4 191 56.5
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.1e-53 212.2 203 53.7
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.1e-53 212.2 203 53.7
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 5.1e-53 212.2 187 55.6
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 5.1e-53 212.2 190 54.2
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.0e-52 210.3 188 56.4
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 2.6e-52 209.9 182 57.1
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 3.3e-52 209.5 182 56.6
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 9.7e-52 208.0 217 54.4
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.7e-51 207.2 179 56.4
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.2e-51 206.8 194 52.6
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 8.2e-51 204.9 197 51.8
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.1e-50 204.5 169 58.0
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 3.5e-49 199.5 165 60.6
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 3.5e-49 199.5 198 52.0
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.7e-48 197.2 175 57.7
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.7e-48 197.2 175 57.7
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.2e-48 196.8 198 51.5
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.4e-47 194.1 198 51.0
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.9e-47 193.7 179 57.0
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 3.2e-47 193.0 190 54.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 4.2e-47 192.6 198 50.0
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 5.5e-47 192.2 221 48.9
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 7.2e-47 191.8 198 50.0
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.2e-46 191.0 189 54.5
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 4.7e-46 189.1 200 51.0
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 6.1e-46 188.7 175 56.0
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 8.0e-46 188.3 146 62.3
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.0e-45 188.0 183 55.7
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.4e-45 187.6 151 61.6
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.8e-45 187.2 201 51.7
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.8e-45 187.2 190 52.1
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.3e-45 186.8 189 52.9
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 3.0e-45 186.4 200 49.5
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 3.9e-45 186.0 180 53.9
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.9e-45 186.0 200 49.5
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 6.7e-45 185.3 190 51.6
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 6.7e-45 185.3 200 49.5
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 6.7e-45 185.3 208 49.0
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 8.8e-45 184.9 198 49.5
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 8.8e-45 184.9 198 49.5
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 8.8e-45 184.9 190 51.6
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.5e-44 184.1 190 51.6
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.5e-44 184.1 153 62.1
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 2.0e-44 183.7 191 52.4
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.6e-44 183.3 190 51.6
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 2.6e-44 183.3 196 49.5
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 3.3e-44 183.0 190 51.6
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 4.4e-44 182.6 191 51.8
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-44 182.6 191 51.8
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-44 182.6 191 51.8
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 4.4e-44 182.6 191 51.8
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 4.4e-44 182.6 190 51.1
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 4.4e-44 182.6 178 53.9
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 5.7e-44 182.2 190 51.1
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 5.7e-44 182.2 190 51.1
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 5.7e-44 182.2 172 54.7
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 5.7e-44 182.2 171 54.4
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 9.7e-44 181.4 188 50.0
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.3e-43 181.0 151 59.6
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 2.8e-43 179.9 190 50.0
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 3.7e-43 179.5 188 51.1
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 6.3e-43 178.7 199 49.2
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.4e-42 177.6 179 52.5
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.8e-42 177.2 161 53.4
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 4.1e-42 176.0 183 48.6
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 2.2e-40 170.2 122 75.4
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 5.0e-40 169.1 150 58.7
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 5.0e-40 169.1 150 58.7
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 6.1e-38 162.2 153 56.2
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.8e-37 160.6 162 50.6
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 4.5e-33 146.0 98 64.3
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 5.9e-33 145.6 133 54.9
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.0e-29 134.8 156 49.4
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.3e-29 133.7 180 44.4
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 2.3e-29 133.7 180 44.4
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.7e-27 126.3 98 63.3
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 6.3e-27 125.6 117 56.4
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.7e-25 120.2 182 41.2
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 3.8e-24 116.3 140 50.7
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 6.6e-24 115.5 105 55.2
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 8.6e-24 115.2 185 37.8
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 9.2e-18 95.1 120 48.3
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 9.2e-18 95.1 120 48.3
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 9.2e-18 95.1 120 48.3
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 9.2e-18 95.1 120 48.3
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 9.2e-18 95.1 120 48.3
FAN23G0919 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.5e-17 92.8 71 70.4
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 3.9e-16 89.7 161 36.6
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-12 75.5 55 58.2
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 9.8e-12 75.1 51 62.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-11 74.3 52 61.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 2.2e-11 73.9 51 60.8
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.2e-11 73.9 51 60.8
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 3.7e-11 73.2 51 60.8
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.6e-09 67.8 75 46.7
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.5e-07 60.5 40 65.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.3e-07 60.1 40 65.0
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 1.6e-06 57.8 47 57.4
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 2.1e-06 57.4 39 56.4


User provided reference genes

Program Settings