Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 9.6e-164 580.1 293 100.0
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 4.5e-129 464.9 288 85.8
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.5e-128 460.7 294 84.4
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.6e-126 456.4 294 83.7
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.5e-121 438.7 289 81.7
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.5e-120 434.5 294 80.6
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 7.7e-113 411.0 291 74.9
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 3.6e-110 402.1 287 73.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 5.3e-106 388.3 264 75.8
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 7.0e-90 334.7 288 63.5
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 5.9e-89 331.6 268 67.5
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 6.6e-88 328.2 278 64.0
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 8.6e-88 327.8 285 61.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 2.5e-87 326.2 289 63.7
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 2.5e-87 326.2 296 63.2
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 3.3e-87 325.9 283 62.9
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 5.6e-87 325.1 298 62.8
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.2e-86 323.9 302 60.9
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.0e-85 320.9 299 59.5
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.4e-85 320.5 298 60.4
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 3.1e-85 319.3 279 62.4
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 4.0e-85 318.9 291 60.5
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.2e-84 317.4 284 60.6
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.5e-84 317.0 302 58.9
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 4.4e-84 315.5 281 62.3
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 4.4e-84 315.5 293 59.7
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 9.8e-84 314.3 261 63.2
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.7e-83 313.5 300 57.0
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.7e-83 312.4 291 60.1
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 6.4e-83 311.6 305 57.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.1e-82 310.8 271 62.0
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.4e-82 309.7 290 60.0
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.4e-82 309.7 291 59.8
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 1.2e-81 307.4 232 65.5
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 2.7e-81 306.2 283 61.5
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.7e-81 306.2 288 58.3
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 3.5e-81 305.8 293 59.7
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 6.0e-81 305.1 294 60.5
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 1.0e-80 304.3 290 58.3
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.7e-80 303.5 274 59.1
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 3.0e-80 302.8 284 57.0
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 5.0e-80 302.0 281 61.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.5e-79 300.4 279 60.2
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 4.3e-79 298.9 259 62.5
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 5.6e-79 298.5 295 58.0
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 7.3e-79 298.1 291 58.1
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 9.5e-79 297.7 293 58.4
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.2e-78 297.4 261 63.2
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 1.2e-78 297.4 305 57.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.6e-78 297.0 295 59.3
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.6e-78 297.0 292 59.6
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.1e-78 296.6 302 57.3
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 2.8e-78 296.2 296 57.8
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.2e-78 295.0 291 57.7
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.1e-77 294.3 288 56.2
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.8e-77 293.5 261 62.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.8e-77 293.5 286 58.4
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.8e-77 293.5 293 58.0
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.3e-77 293.1 290 58.6
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 3.1e-77 292.7 298 57.7
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.1e-77 292.7 288 58.0
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 5.2e-77 292.0 216 69.9
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 2.0e-76 290.0 293 57.7
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 2.6e-76 289.7 269 56.9
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.4e-76 289.3 209 70.3
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 4.4e-76 288.9 222 68.9
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.4e-76 288.9 283 58.3
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 4.4e-76 288.9 272 57.4
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 7.5e-76 288.1 299 53.5
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 1.3e-75 287.3 300 57.7
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.7e-75 287.0 319 53.6
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.7e-75 285.8 287 57.1
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 6.4e-75 285.0 293 57.0
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.4e-75 285.0 301 53.8
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 8.3e-75 284.6 301 56.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 2.4e-74 283.1 293 57.0
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 2.4e-74 283.1 293 57.0
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 4.1e-74 282.3 293 56.7
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 7.0e-74 281.6 220 67.3
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.1e-73 280.0 301 53.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 4.6e-73 278.9 204 69.6
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.3e-72 277.3 211 67.8
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.7e-72 276.9 295 53.2
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.7e-72 276.9 301 56.5
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 3.0e-72 276.2 288 54.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 6.6e-72 275.0 218 65.6
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 8.6e-72 274.6 270 57.8
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 8.6e-72 274.6 297 52.9
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 1.5e-71 273.9 292 53.8
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.9e-71 273.5 284 55.6
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.9e-71 273.5 269 59.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 7.3e-71 271.6 208 69.2
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 7.3e-71 271.6 208 69.2
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.8e-70 269.6 277 54.2
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 4.7e-70 268.9 275 56.7
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.1e-69 267.7 214 62.6
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.4e-69 267.3 218 64.7
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 5.2e-69 265.4 222 63.1
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.2e-68 264.2 203 66.0
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.0e-68 263.5 249 58.2
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.0e-68 263.5 249 58.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.9e-67 259.6 214 62.6
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.1e-66 257.7 272 54.4
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 2.5e-63 246.5 206 60.7
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 4.7e-62 242.3 203 62.1
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.4e-61 240.0 266 50.0
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 6.8e-61 238.4 234 58.1
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 8.4e-59 231.5 214 58.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 1.2e-57 227.6 200 59.5
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.6e-54 217.2 200 55.0
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.5e-52 210.7 211 55.5
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.1e-50 204.5 209 55.5
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.7e-49 199.9 203 48.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.5e-47 194.1 165 65.5
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.3e-46 191.0 200 54.0
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.9e-39 167.2 214 43.9
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 5.6e-39 165.6 206 50.0
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.3e-38 164.5 175 53.7
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 2.8e-38 163.3 224 47.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.4e-37 161.0 213 45.1
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 5.3e-37 159.1 239 38.1
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-36 157.9 205 43.9
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 2.6e-36 156.8 128 66.4
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.6e-30 137.5 221 42.1
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 4.5e-28 129.4 118 61.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.2e-26 122.9 111 60.4
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.8e-19 99.8 83 57.8
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 1.6e-17 94.4 132 40.9
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.0e-16 91.7 59 67.8
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 2.8e-14 83.6 78 59.0
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.8e-14 83.6 211 33.6
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.4e-13 80.5 145 39.3
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.3e-13 79.3 114 38.6
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.9e-13 79.0 76 55.3


User provided reference genes

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