Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.7e-203 711.8 369 100.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.1e-160 569.3 369 85.1
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 5.8e-150 534.6 367 79.3
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.2e-149 532.7 367 79.3
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.3e-148 527.3 367 77.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.2e-147 526.9 367 77.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.4e-137 491.1 367 74.7
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.0e-125 454.1 368 68.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 3.6e-123 445.7 371 68.5
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.9e-122 442.2 369 68.8
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.0e-106 391.0 375 60.8
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 3.9e-106 389.0 375 60.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.7e-106 388.3 373 59.0
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 8.8e-106 387.9 374 59.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.7e-102 374.8 374 57.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.0e-101 374.4 375 58.9
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.7e-101 373.6 375 57.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.2e-98 362.1 380 56.1
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-95 353.6 382 55.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.1e-95 352.8 377 55.2
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.3e-95 352.1 373 54.2
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 7.0e-95 351.7 371 56.1
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.2e-94 350.9 382 55.2
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.0e-93 347.8 380 55.0
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.5e-92 344.0 374 55.9
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 7.2e-92 341.7 373 56.8
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.1e-91 340.1 374 54.3
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.7e-91 339.7 371 55.3
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.8e-90 337.0 375 53.3
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-89 334.3 371 52.0
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.3e-88 330.9 379 53.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.8e-88 329.7 375 52.8
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 6.3e-88 328.6 380 51.3
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 6.3e-88 328.6 380 51.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 6.3e-88 328.6 409 49.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.4e-87 327.4 371 52.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 9.1e-87 324.7 318 58.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.6e-86 323.9 371 51.8
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.5e-86 322.4 375 51.7
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.9e-86 322.0 374 51.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 5.9e-86 322.0 375 50.9
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 2.9e-85 319.7 379 52.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.6e-85 318.5 379 51.7
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 8.6e-85 318.2 378 51.6
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.9e-84 317.0 376 52.1
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.5e-84 316.6 375 52.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 4.2e-84 315.8 375 50.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 5.5e-84 315.5 395 50.9
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 5.5e-84 315.5 381 50.9
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 7.2e-84 315.1 375 51.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.2e-83 314.3 374 50.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-83 313.5 377 51.2
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 3.6e-83 312.8 379 49.9
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.4e-82 310.8 375 51.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.8e-82 310.5 376 51.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.0e-82 309.7 377 50.1
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 2.6e-81 306.6 375 51.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 9.8e-81 304.7 383 49.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.7e-80 303.9 383 52.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 8.3e-80 301.6 371 49.6
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.2e-79 299.7 369 49.1
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 9.2e-79 298.1 367 48.2
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.7e-78 296.6 169 91.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.3e-76 288.5 373 48.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.0e-74 284.6 372 50.3
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 3.4e-73 279.6 369 46.6
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.9e-72 276.6 383 47.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.1e-71 274.6 369 45.8
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.2e-71 273.1 372 47.8
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.2e-71 273.1 396 47.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-70 271.2 396 46.7
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.6e-70 269.2 383 46.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.6e-70 269.2 374 44.9
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.7e-69 267.3 373 46.4
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.0e-69 266.5 381 46.5
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.6e-67 260.8 379 45.6
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.1e-67 260.4 375 45.6
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.8e-67 260.0 377 47.5
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.8e-67 260.0 375 45.1
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 4.7e-67 259.2 382 48.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-66 258.1 379 46.2
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.4e-66 257.7 373 45.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-66 255.8 377 47.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.6e-65 253.4 381 45.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.3e-64 251.1 377 46.9
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 8.3e-64 248.4 379 45.1
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 7.8e-62 241.9 377 42.7
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 6.6e-61 238.8 373 43.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-60 237.7 375 42.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-60 237.7 378 41.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.5e-60 237.7 370 43.0
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.8e-59 233.4 417 41.5
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 4.7e-59 232.6 378 44.7
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 8.1e-59 231.9 373 44.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.1e-58 231.5 377 43.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.0e-58 229.6 374 42.8
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.2e-57 228.0 255 49.4
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 3.4e-57 226.5 369 42.5
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.4e-57 226.5 376 41.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-57 226.1 370 41.6
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.9e-56 223.4 315 47.6
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 6.4e-56 222.2 315 47.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 8.3e-56 221.9 385 41.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 5.4e-55 219.2 372 39.5
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 7.1e-55 218.8 374 42.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.7e-54 216.9 376 44.4
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.2e-51 208.0 374 42.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-51 206.8 380 41.6
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.2e-51 205.7 375 41.3
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-50 204.5 369 40.4
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.9e-50 201.8 318 43.7
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.2e-49 201.4 367 40.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.6e-49 200.3 366 40.4
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 7.6e-49 198.7 376 41.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.4e-42 177.9 373 39.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.0e-41 174.1 284 43.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 7.6e-41 172.2 205 54.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 7.6e-41 172.2 205 54.1
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.2e-40 170.6 353 36.8
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.9e-40 169.5 374 40.1
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.9e-39 167.5 374 38.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.2e-39 166.8 379 38.8
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.6e-38 164.5 374 35.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.3e-37 160.6 376 37.8
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.9e-37 159.8 383 37.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-34 151.0 370 35.7
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.1e-34 150.2 365 35.3
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.0e-34 149.8 378 37.0
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 9.0e-34 148.7 379 35.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.6e-33 147.1 352 35.5
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 4.9e-32 142.9 372 34.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.4e-31 141.4 372 34.7
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 3.2e-31 140.2 372 34.1
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.1e-30 137.5 372 33.3
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 6.0e-30 136.0 346 33.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.0e-29 135.2 372 33.9
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 5.1e-29 132.9 362 30.9
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.8e-27 126.3 357 31.4
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-25 120.9 382 33.0
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 8.7e-21 105.5 437 27.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.4e-20 102.4 231 32.9
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.5e-17 94.7 218 33.9
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.9e-16 90.5 115 49.6
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 2.9e-16 90.5 188 36.7
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 3.2e-15 87.0 163 39.3
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-13 81.3 119 46.2
RcHm_v2.0_Chr1g0382591 Rosa chinensis HOM05D003640 ORTHO05D345170 2.3e-13 80.9 67 67.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.9e-13 80.1 222 36.5
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.3e-12 77.0 427 27.4
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-08 64.7 152 33.6
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 5.5e-07 59.7 90 42.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 7.2e-07 59.3 414 26.1
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 3.6e-06 57.0 98 38.8
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 4.6e-06 56.6 57 49.1
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 6.1e-06 56.2 94 38.3
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 7.9e-06 55.8 194 29.4


User provided reference genes

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