Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-175 619.4 324 100.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 5.3e-147 524.6 286 95.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.0e-133 479.6 296 86.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.2e-112 409.1 296 75.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.2e-112 409.1 296 75.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.1e-111 406.4 300 74.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.6e-111 405.6 304 75.0
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.8e-110 403.3 299 73.9
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.0e-110 402.5 300 74.3
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.5e-96 356.3 290 69.0
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.3e-92 341.7 301 67.8
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 3.2e-91 339.3 287 66.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 7.0e-91 338.2 287 66.2
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 4.1e-83 312.4 319 58.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.6e-82 310.5 299 60.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.0e-82 308.5 311 60.5
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.7e-81 307.0 316 57.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.9e-80 303.5 289 63.0
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.4e-77 292.4 295 59.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.8e-77 292.0 299 59.2
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.0e-73 281.2 344 52.3
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.0e-73 281.2 309 56.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.7e-73 280.4 299 58.9
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 8.6e-73 278.1 251 62.5
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 5.6e-72 275.4 309 55.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.2e-71 271.9 309 56.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-70 270.8 297 55.9
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 8.9e-70 268.1 275 58.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.3e-68 264.2 301 56.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.3e-68 264.2 309 53.7
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.7e-68 263.8 287 55.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 2.2e-68 263.5 297 54.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.2e-68 263.5 299 55.2
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.9e-67 260.4 303 55.4
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.9e-67 260.4 294 55.1
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 9.2e-67 258.1 306 54.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.6e-66 257.3 298 54.0
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.5e-66 256.1 323 51.7
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.6e-66 255.8 300 54.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 6.0e-66 255.4 299 54.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 7.8e-66 255.0 287 54.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 7.8e-66 255.0 316 51.6
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 7.8e-66 255.0 287 53.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.0e-65 254.6 299 54.8
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.0e-65 254.6 301 53.5
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.3e-65 253.4 311 53.1
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-64 251.1 318 52.5
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.1e-64 251.1 311 52.4
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.9e-64 250.4 295 52.9
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.5e-64 250.0 245 58.0
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.3e-64 249.2 296 53.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.6e-64 248.8 258 58.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.3e-64 248.4 297 55.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.2e-63 247.7 301 53.2
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-63 246.9 312 53.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.8e-63 246.5 327 49.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 8.1e-63 245.0 280 55.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.4e-62 243.4 296 55.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.4e-62 243.4 300 54.3
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 3.1e-62 243.0 288 53.5
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.0e-62 242.7 292 54.1
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 4.0e-62 242.7 238 58.4
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.9e-62 241.5 300 54.0
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-61 241.1 144 89.6
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.5e-61 240.7 308 52.3
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-61 239.6 295 52.2
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.8e-60 236.1 317 49.2
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 4.9e-60 235.7 290 52.8
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.9e-60 235.7 285 51.9
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 6.4e-60 235.3 306 50.0
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 8.4e-60 235.0 316 47.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.4e-59 234.2 290 50.0
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.4e-59 233.4 301 48.5
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 4.2e-59 232.6 247 56.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.6e-58 230.7 304 51.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.1e-58 230.3 252 53.6
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.7e-58 229.9 266 52.3
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 7.8e-58 228.4 296 50.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.8e-58 228.4 266 51.9
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.3e-57 227.6 187 65.8
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.9e-57 226.1 304 49.3
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 5.1e-57 225.7 300 48.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.1e-57 225.7 288 49.7
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 4.3e-56 222.6 271 51.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.3e-56 221.9 277 49.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.1e-54 218.0 311 50.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.6e-53 213.4 290 50.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 9.9e-53 211.5 290 49.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-52 210.3 270 49.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 3.8e-52 209.5 287 48.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 8.4e-52 208.4 248 54.8
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.9e-51 207.2 306 46.1
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 4.2e-51 206.1 307 44.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 7.1e-51 205.3 289 48.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.0e-49 201.4 290 45.2
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 6.6e-49 198.7 289 47.8
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 8.7e-49 198.4 290 44.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 9.6e-48 194.9 259 49.8
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.1e-47 193.7 240 51.2
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.6e-45 186.8 252 47.6
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 9.9e-45 184.9 258 48.4
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.3e-44 184.5 291 43.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.1e-43 181.4 220 53.2
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.4e-43 180.3 249 46.6
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 4.2e-43 179.5 274 46.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 5.4e-43 179.1 288 44.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 9.3e-43 178.3 323 44.0
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.6e-42 177.6 241 47.3
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 6.7e-41 172.2 203 49.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 5.6e-40 169.1 245 45.3
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.1e-39 167.2 253 46.6
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.8e-38 164.1 148 63.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 6.9e-38 162.2 148 63.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 9.0e-38 161.8 162 59.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 9.0e-38 161.8 162 59.3
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.2e-37 161.4 155 58.7
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.0e-37 160.6 163 58.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.0e-37 160.6 163 58.9
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 2.6e-37 160.2 155 58.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.7e-36 157.5 181 53.6
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.9e-36 156.0 294 41.5
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-35 154.8 309 40.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.5e-35 153.7 170 53.5
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.2e-35 152.9 147 59.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 9.3e-35 151.8 140 62.1
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.1e-34 150.6 304 41.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.7e-34 150.2 157 58.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 3.5e-34 149.8 329 38.6
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.5e-34 149.8 147 59.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.5e-34 149.8 256 44.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 4.6e-34 149.4 140 60.7
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.3e-33 147.9 137 64.2
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 3.0e-33 146.7 137 62.8
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 3.9e-33 146.4 166 53.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 5.1e-33 146.0 252 41.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 7.4e-32 142.1 180 51.1
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.6e-31 141.0 142 59.9
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.0e-29 134.0 239 41.8
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.6e-29 133.7 115 63.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 7.6e-29 132.1 239 43.9
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.0e-28 131.7 312 34.9
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.4e-28 128.6 206 42.2
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.6e-26 124.4 134 53.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.1e-22 111.7 114 54.4
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.0e-20 105.1 124 55.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 5.5e-19 99.4 191 38.7
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.7e-16 89.4 109 48.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.4e-16 89.0 59 72.9
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 9.7e-16 88.6 87 59.8
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.7e-15 86.7 87 58.6
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.4e-14 84.7 100 58.0


User provided reference genes

Program Settings