Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1533.5 843 100.0
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1310.8 853 86.9
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1305.8 853 86.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1304.7 851 85.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1272.3 853 85.3
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 0.0e+00 1211.8 775 86.6
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 0.0e+00 1192.9 861 76.1
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1132.5 858 74.2
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1126.3 858 74.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-291 1006.5 845 69.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.5e-291 1004.6 847 69.7
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.0e-274 948.7 904 61.8
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 8.6e-274 947.2 861 65.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 8.9e-271 937.2 867 64.2
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 9.2e-268 927.2 854 64.4
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.7e-267 925.6 802 66.1
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.2e-259 900.2 868 64.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 3.0e-258 895.6 855 60.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.1e-256 889.4 876 61.3
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.9e-253 879.0 866 60.9
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.8e-253 878.6 858 60.7
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 4.1e-252 875.2 861 61.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.6e-251 873.2 854 59.3
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.2e-248 863.6 871 59.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 8.1e-248 860.9 876 60.8
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.4e-247 860.1 876 59.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.8e-247 859.8 839 60.4
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 5.2e-247 858.2 839 60.8
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 4.4e-246 855.1 867 62.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 2.9e-245 852.4 910 56.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.1e-244 850.5 859 61.0
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 1.9e-244 849.7 856 58.6
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.7e-242 843.2 857 58.9
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.5e-241 840.1 875 56.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.3e-240 837.0 872 56.7
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.6e-240 835.5 802 62.8
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 3.6e-240 835.5 765 65.2
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 8.1e-240 834.3 840 59.3
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.8e-239 833.2 875 57.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.0e-239 832.0 874 59.6
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 9.0e-239 830.9 877 56.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.6e-238 829.3 864 58.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.9e-237 825.9 877 54.6
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.8e-237 825.5 862 60.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.4e-236 823.5 835 61.2
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 4.2e-236 822.0 868 56.9
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.2e-236 822.0 868 54.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 9.3e-236 820.8 856 58.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-234 816.2 492 89.4
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 5.6e-233 811.6 874 56.9
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.4e-233 811.2 767 64.1
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.1e-231 807.4 856 56.4
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.1e-231 805.8 876 57.8
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.0e-230 803.1 870 55.6
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.8e-229 798.9 822 56.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 5.5e-228 795.0 934 52.5
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.6e-227 793.5 866 57.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.5e-225 786.9 868 57.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.4e-223 779.6 827 56.7
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.6e-222 776.2 867 57.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.5e-222 775.4 873 55.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 7.6e-222 774.6 875 56.8
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-220 770.8 869 57.3
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.0e-219 765.0 867 56.1
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 3.9e-218 762.3 899 53.2
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 3.1e-215 752.7 867 54.6
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.6e-214 748.0 754 60.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.2e-213 746.5 832 55.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-212 744.2 869 57.4
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-209 734.2 869 57.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.8e-208 728.8 867 56.5
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.8e-208 728.8 861 53.5
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 6.9e-207 724.9 872 52.2
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.7e-205 720.3 832 54.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.1e-204 717.6 887 50.6
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 4.2e-204 715.7 842 52.1
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.8e-200 703.0 827 51.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-199 701.0 858 52.2
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 7.0e-199 698.4 912 52.6
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.2e-197 693.3 850 51.2
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.8e-194 683.7 850 50.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.4e-191 673.3 883 52.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 5.3e-191 672.2 859 52.0
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-190 669.8 869 52.8
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 4.5e-190 669.1 872 49.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.9e-189 666.4 855 50.5
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 5.0e-189 665.6 821 53.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.2e-186 655.6 659 58.6
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 6.7e-186 655.2 862 51.2
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-185 653.7 788 53.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.7e-184 650.6 848 48.6
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 6.3e-184 648.7 668 58.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.1e-183 646.0 871 49.4
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-180 637.1 866 49.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.6e-179 634.0 864 50.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.7e-179 632.5 857 49.5
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.2e-176 623.6 813 52.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.9e-173 613.2 856 49.9
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.6e-173 611.7 807 49.4
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.2e-171 607.8 818 49.3
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 6.8e-170 602.1 789 51.1
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.7e-168 596.3 821 50.5
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.2e-161 574.7 804 48.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.8e-161 572.4 686 51.9
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.1e-159 568.2 752 49.2
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.1e-159 568.2 896 46.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.4e-159 567.0 804 47.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 9.2e-159 565.1 690 52.3
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 6.0e-158 562.4 619 54.6
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-155 554.3 369 85.1
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 4.1e-151 539.7 786 47.6
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-150 538.1 786 46.9
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.7e-149 534.3 805 45.6
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.3e-148 529.6 861 43.4
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 7.3e-148 528.9 286 95.8
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.0e-145 520.8 745 50.2
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.4e-144 515.8 753 48.9
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 5.1e-141 506.1 860 42.8
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.6e-140 502.7 748 48.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 6.8e-138 495.7 742 48.9
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.8e-137 492.7 746 48.5
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 5.8e-137 492.7 860 42.9
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.9e-136 489.6 768 48.2
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.2e-131 474.9 848 41.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.4e-130 471.5 844 40.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.6e-129 467.2 749 47.3
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 8.4e-128 462.2 834 40.5
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.3e-120 438.3 739 45.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.7e-117 426.0 743 45.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 8.7e-117 425.6 742 46.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.3e-116 423.3 733 45.7
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 8.1e-115 419.1 741 45.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-113 415.2 831 36.8
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-113 414.8 743 44.7
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 9.3e-111 405.6 741 44.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 9.3e-103 379.0 716 43.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 4.6e-94 350.1 412 54.9
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.7e-91 341.7 317 61.8
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.7e-91 341.7 317 61.8
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.5e-84 318.5 907 34.6
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.7e-75 287.3 662 39.6
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 9.7e-68 262.7 906 34.2
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 6.3e-67 260.0 731 33.0
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.1e-66 259.2 420 41.7
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-64 251.9 738 34.6
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.9e-64 251.1 144 95.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.5e-64 250.0 743 32.6
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 7.5e-52 209.9 355 45.4
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.9e-48 198.0 688 29.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.3e-39 167.9 153 60.1
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 7.3e-39 166.8 153 60.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 3.2e-34 151.4 163 51.5
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.3e-32 145.2 212 45.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.9e-31 142.1 123 62.6
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 4.1e-26 124.4 173 44.5
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.3e-23 114.4 114 52.6
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-22 112.1 89 65.2
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 5.8e-20 104.0 124 54.0
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 4.2e-18 97.8 188 38.8
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-17 95.1 163 41.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-16 92.8 128 43.0
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.7e-16 92.4 121 43.8
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 5.1e-16 90.9 50 94.0
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 3.3e-15 88.2 211 35.1
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 8.1e-14 83.6 87 54.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 8.1e-14 83.6 87 54.0
RcHm_v2.0_Chr1g0382591 Rosa chinensis HOM05D003640 ORTHO05D345170 1.4e-13 82.8 84 57.1
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.2e-12 79.7 202 36.6
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 2.6e-12 78.6 334 30.5
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 5.8e-12 77.4 122 43.4
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 7.6e-12 77.0 100 52.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 9.9e-12 76.6 400 28.0
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 2.3e-08 65.5 60 56.7
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.3e-08 65.5 80 42.5
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 3.0e-08 65.1 79 43.0
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 6.6e-08 63.9 198 31.8
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 8.7e-08 63.5 45 68.9
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 4.3e-07 61.2 188 33.0


User provided reference genes

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