Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0382511 Rosa chinensis HOM05D000051 ORTHO05D000015 1.6e-55 219.2 106 100.0
FAN10G1889 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.0e-23 112.5 102 58.8
FAN10G3451 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.7e-22 109.4 102 57.8
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 1.9e-16 89.4 92 51.1
RcHm_v2.0_Chr5g0060771 Rosa chinensis HOM05D000051 ORTHO05D000015 1.6e-15 86.3 79 53.2
RcHm_v2.0_Chr5g0060761 Rosa chinensis HOM05D000051 ORTHO05D000015 3.5e-15 85.1 64 62.5
RcHm_v2.0_Chr5g0059951 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-14 83.6 80 55.0
FAN16G3673 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.1e-14 81.3 64 60.9
FvH4_3g33400 Fragaria vesca HOM05D000051 ORTHO05D000015 8.6e-14 80.5 64 59.4
Prupe.4G151700 Prunus persica HOM05D000051 ORTHO05D000015 2.5e-13 79.0 64 53.1
FvH4_3g32940 Fragaria vesca HOM05D000051 ORTHO05D000015 4.3e-13 78.2 64 56.2
FAN25G1937 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.6e-13 77.8 64 57.8
FvH4_3g33401 Fragaria vesca HOM05D012937 ORTHO05D000015 9.5e-13 77.0 72 54.2
FAN18G0789 Fragaria x ananassa HOM05D012937 ORTHO05D000015 9.5e-13 77.0 72 54.2
FvH4_3g33430 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-12 76.6 79 48.1
RcHm_v2.0_Chr5g0028261 Rosa chinensis HOM05D000051 ORTHO05D000015 1.6e-12 76.3 64 56.2
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 2.1e-12 75.9 57 64.9
FAN13G0806 Fragaria x ananassa HOM05D012937 ORTHO05D000015 6.2e-12 74.3 67 55.2
FAN13G1655 Fragaria x ananassa HOM05D012937 ORTHO05D000015 6.2e-12 74.3 72 52.8
MD03G1112300 Malus domestica HOM05D000051 ORTHO05D000015 8.1e-12 73.9 82 51.2
FAN28G0582 Fragaria x ananassa HOM05D012937 ORTHO05D000015 4.0e-11 71.6 72 52.8
MD03G1255400 Malus domestica HOM05D000051 ORTHO05D000015 6.8e-11 70.9 72 51.4
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 1.2e-10 70.1 67 56.7
MD03G1112000 Malus domestica HOM05D000051 ORTHO05D000015 2.6e-10 68.9 62 56.5
MD03G1112100 Malus domestica HOM05D000051 ORTHO05D000015 2.6e-10 68.9 57 61.4
RcHm_v2.0_Chr5g0028411 Rosa chinensis HOM05D000051 ORTHO05D000015 7.6e-10 67.4 63 57.1
FvH4_3g17581 Fragaria vesca HOM05D000051 ORTHO05D000015 1.3e-09 66.6 58 56.9
FAN11G2886 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.3e-09 66.6 58 56.9
MD11G1266000 Malus domestica HOM05D000051 ORTHO05D000015 1.3e-09 66.6 56 60.7
RcHm_v2.0_Chr5g0028481 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-09 66.6 62 51.6
MD03G1253800 Malus domestica HOM05D000051 ORTHO05D000015 1.7e-09 66.2 50 66.0
MD11G1275600 Malus domestica HOM05D000051 ORTHO05D000015 2.2e-09 65.9 51 62.7
RcHm_v2.0_Chr1g0363171 Rosa chinensis HOM05D000051 ORTHO05D000015 2.2e-09 65.9 69 52.2
FAN06G4287 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.9e-09 65.5 106 45.3
FAN06G4717 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.9e-09 65.5 106 45.3
RcHm_v2.0_Chr5g0028451 Rosa chinensis HOM05D000051 ORTHO05D000015 2.9e-09 65.5 61 55.7
RcHm_v2.0_Chr5g0028511 Rosa chinensis HOM05D000051 ORTHO05D000015 2.9e-09 65.5 65 60.0
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 3.8e-09 65.1 62 53.2
FvH4_7g28000 Fragaria vesca HOM05D000051 ORTHO05D000015 3.8e-09 65.1 106 47.2
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.8e-09 65.1 62 53.2
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 3.8e-09 65.1 82 47.6
RcHm_v2.0_Chr6g0304711 Rosa chinensis HOM05D000051 ORTHO05D000015 4.9e-09 64.7 62 53.2
FvH4_3g17090 Fragaria vesca HOM05D000051 ORTHO05D000015 6.4e-09 64.3 52 59.6
FAN11G1909 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.4e-09 64.3 52 59.6
RcHm_v2.0_Chr5g0029291 Rosa chinensis HOM05D000051 ORTHO05D000015 6.4e-09 64.3 71 49.3
FAN16G1794 Fragaria x ananassa HOM05D000100 ORTHO05D000052 8.4e-09 63.9 58 56.9
MD11G1265000 Malus domestica HOM05D000051 ORTHO05D000015 8.4e-09 63.9 68 50.0
RcHm_v2.0_Chr5g0040081 Rosa chinensis HOM05D000051 ORTHO05D000015 8.4e-09 63.9 59 54.2
FvH4_3g17580 Fragaria vesca HOM05D000051 ORTHO05D000015 1.1e-08 63.5 65 50.8
FAN16G3202 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.1e-08 63.5 65 50.8
FvH4_3g17190 Fragaria vesca HOM05D000051 ORTHO05D000015 1.4e-08 63.2 58 56.9
FvH4_5g35600 Fragaria vesca HOM05D000051 ORTHO05D000015 1.4e-08 63.2 54 59.3
FAN02G3071 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.4e-08 63.2 70 50.0
FAN05G4322 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.4e-08 63.2 70 50.0
FAN11G1258 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.4e-08 63.2 58 56.9
FAN18G4561 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.4e-08 63.2 54 59.3
FvH4_3g17100 Fragaria vesca HOM05D000051 ORTHO05D000015 1.9e-08 62.8 62 50.0
FAN11G3946 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.9e-08 62.8 62 50.0
FvH4_2g37070 Fragaria vesca HOM05D000051 ORTHO05D000015 2.4e-08 62.4 62 53.2
FAN28G2657 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.4e-08 62.4 57 52.6
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.4e-08 62.4 71 50.7
FAN06G3565 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-08 62.0 107 42.1
FAN23G0111 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-08 62.0 83 43.4
RcHm_v2.0_Chr7g0237071 Rosa chinensis HOM05D000051 ORTHO05D000015 3.2e-08 62.0 57 56.1
FvH4_3g17130 Fragaria vesca HOM05D000051 ORTHO05D000015 4.1e-08 61.6 60 51.7
FAN03G3462 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.1e-08 61.6 88 43.2
FAN25G3744 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.1e-08 61.6 67 52.2
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 4.1e-08 61.6 68 50.0
Prupe.4G161000 Prunus persica HOM05D000051 ORTHO05D000015 4.1e-08 61.6 61 54.1
RcHm_v2.0_Chr7g0197921 Rosa chinensis HOM05D000051 ORTHO05D000015 4.1e-08 61.6 82 48.8
FvH4_3g21190 Fragaria vesca HOM05D000051 ORTHO05D000015 5.4e-08 61.2 67 49.3
FAN11G3894 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.4e-08 61.2 67 49.3
MD03G1252900 Malus domestica HOM05D000051 ORTHO05D000015 5.4e-08 61.2 69 46.4
RcHm_v2.0_Chr5g0028501 Rosa chinensis HOM05D000051 ORTHO05D000015 5.4e-08 61.2 65 55.4
FvH4_1g06320 Fragaria vesca HOM05D000051 ORTHO05D000015 7.1e-08 60.8 52 55.8
FvH4_1g09890 Fragaria vesca HOM05D000051 ORTHO05D000015 7.1e-08 60.8 57 54.4
FvH4_6g07500 Fragaria vesca HOM05D000051 ORTHO05D000015 7.1e-08 60.8 73 49.3
FAN03G0619 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.1e-08 60.8 106 46.2
FAN09G0905 Fragaria x ananassa HOM05D007743 ORTHO05D000015 7.1e-08 60.8 70 48.6
FAN10G1038 Fragaria x ananassa HOM05D000091 ORTHO05D000015 7.1e-08 60.8 65 52.3
FAN14G2385 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.1e-08 60.8 73 49.3
FAN25G1230 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.1e-08 60.8 53 64.2
MD03G1253700 Malus domestica HOM05D000051 ORTHO05D000015 7.1e-08 60.8 97 41.2
MD11G1265100 Malus domestica HOM05D000051 ORTHO05D000015 7.1e-08 60.8 77 45.5
RcHm_v2.0_Chr5g0030631 Rosa chinensis HOM05D000051 ORTHO05D000015 7.1e-08 60.8 61 52.5
FAN01G1280 Fragaria x ananassa HOM05D000051 ORTHO05D017957 9.2e-08 60.5 106 46.2
FAN04G3087 Fragaria x ananassa HOM05D000051 ORTHO05D000015 9.2e-08 60.5 54 57.4
FvH4_3g18021 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-07 60.1 51 60.8
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 1.2e-07 60.1 51 60.8
FAN16G2999 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-07 60.1 109 38.5
FAN19G2798 Fragaria x ananassa HOM05D000051 ORTHO05D010714 1.2e-07 60.1 51 56.9
Prupe.4G158900 Prunus persica HOM05D000051 ORTHO05D000015 1.2e-07 60.1 56 53.6
Prupe.4G158800 Prunus persica HOM05D000051 ORTHO05D000015 1.6e-07 59.7 51 56.9
FvH4_6g08520 Fragaria vesca HOM05D000051 ORTHO05D000015 2.1e-07 59.3 51 58.8
FAN02G0303 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.1e-07 59.3 51 60.8
MD03G1246000 Malus domestica HOM05D000051 ORTHO05D000015 2.1e-07 59.3 56 51.8
Prupe.4G161200 Prunus persica HOM05D000051 ORTHO05D000015 2.1e-07 59.3 51 56.9
RcHm_v2.0_Chr5g0028581 Rosa chinensis HOM05D000051 ORTHO05D000015 2.1e-07 59.3 58 55.2
FvH4_3g17110 Fragaria vesca HOM05D000051 ORTHO05D000015 2.7e-07 58.9 61 47.5
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 3.5e-07 58.5 78 41.0
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 3.5e-07 58.5 69 46.4
Migut.M00541 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.5e-07 58.5 59 47.5
FAN03G3040 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.5e-07 58.5 76 43.4
FAN10G3157 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.5e-07 58.5 66 48.5
FAN21G1161 Fragaria x ananassa HOM05D000061 ORTHO05D002267 3.5e-07 58.5 58 51.7
FAN25G2557 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.5e-07 58.5 72 45.8
MD08G1193400 Malus domestica HOM05D000051 ORTHO05D000015 3.5e-07 58.5 54 51.9
MD11G1265300 Malus domestica HOM05D000051 ORTHO05D000015 4.6e-07 58.2 86 43.0
RcHm_v2.0_Chr6g0309621 Rosa chinensis HOM05D000051 ORTHO05D000015 4.6e-07 58.2 61 47.5
Migut.L00791 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.0e-07 57.8 59 44.1
Migut.M00206 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.0e-07 57.8 92 35.9
FvH4_5g02210 Fragaria vesca HOM05D000051 ORTHO05D000015 6.0e-07 57.8 82 47.6
FAN16G1730 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.0e-07 57.8 61 47.5
FAN18G3549 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.0e-07 57.8 82 47.6
Dinv17488 Davidia involucrata HOM05D000051 ORTHO05D000015 7.8e-07 57.4 61 45.9
FAN25G0638 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.8e-07 57.4 66 45.5
RcHm_v2.0_Chr7g0197881 Rosa chinensis HOM05D000051 ORTHO05D000015 7.8e-07 57.4 70 47.1
FAN11G3342 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.0e-06 57.0 76 42.1
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.0e-06 57.0 51 56.9
MD11G1266700 Malus domestica HOM05D000051 ORTHO05D000015 1.0e-06 57.0 56 50.0
MD11G1274900 Malus domestica HOM05D000051 ORTHO05D000015 1.0e-06 57.0 52 61.5
RcHm_v2.0_Chr5g0028551 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-06 57.0 58 53.4
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 1.3e-06 56.6 61 50.8
FAN08G2405 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.3e-06 56.6 54 55.6
MD03G1253500 Malus domestica HOM05D000051 ORTHO05D000015 1.7e-06 56.2 96 39.6
QL08p012322 Quercus lobata HOM05D000051 ORTHO05D000015 1.7e-06 56.2 64 45.3
FvH4_5g02221 Fragaria vesca HOM05D000051 ORTHO05D000015 2.3e-06 55.8 59 47.5
MD11G1267000 Malus domestica HOM05D000051 ORTHO05D000015 2.3e-06 55.8 64 48.4
vmacro11751 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.3e-06 55.8 68 47.1
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.0e-06 55.5 55 50.9
FvH4_7g28011 Fragaria vesca HOM05D000051 ORTHO05D000015 3.0e-06 55.5 41 58.5
FvH4_7g28040 Fragaria vesca HOM05D000051 ORTHO05D017957 3.0e-06 55.5 41 58.5
FAN23G2711 Fragaria x ananassa HOM05D012937 ORTHO05D000015 3.0e-06 55.5 50 58.0
Dinv17485 Davidia involucrata HOM05D000051 ORTHO05D000015 3.9e-06 55.1 56 46.4
FAN05G5209 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.9e-06 55.1 59 49.2
FAN06G2306 Fragaria x ananassa HOM05D000051 ORTHO05D017957 3.9e-06 55.1 41 61.0
FAN09G4418 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.9e-06 55.1 59 49.2
FAN21G3599 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.9e-06 55.1 42 59.5
FAN25G3081 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.9e-06 55.1 42 59.5
FAN28G2792 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.9e-06 55.1 66 45.5
Ah.08g209330 Amaranthus hybridus HOM05D000051 ORTHO05D000015 5.1e-06 54.7 109 34.9
FvH4_2g40800 Fragaria vesca HOM05D000051 ORTHO05D000015 5.1e-06 54.7 72 43.1
FAN05G2255 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.1e-06 54.7 56 50.0
FAN16G2835 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.1e-06 54.7 67 52.2
FAN25G2060 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.1e-06 54.7 63 46.0
RcHm_v2.0_Chr5g0028521 Rosa chinensis HOM05D000051 ORTHO05D000015 5.1e-06 54.7 56 48.2
Migut.M00548 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.6e-06 54.3 61 42.6
Migut.M00835 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.6e-06 54.3 61 42.6
FAN08G3685 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.6e-06 54.3 61 49.2
FAN17G0415 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.6e-06 54.3 52 55.8
MD03G1253200 Malus domestica HOM05D000051 ORTHO05D000015 6.6e-06 54.3 51 49.0
RcHm_v2.0_Chr5g0028471 Rosa chinensis HOM05D000051 ORTHO05D000015 6.6e-06 54.3 52 55.8
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 6.6e-06 54.3 65 43.1
FAN20G2836 Fragaria x ananassa HOM05D000051 ORTHO05D000015 8.6e-06 53.9 69 44.9
Prupe.4G160900 Prunus persica HOM05D000051 ORTHO05D000015 8.6e-06 53.9 77 37.7
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 8.6e-06 53.9 42 59.5


User provided reference genes

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