Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0381981 Rosa chinensis HOM05D005634 ORTHO05D006926 2.8e-100 368.6 188 100.0
FAN03G3354 Fragaria x ananassa HOM05D005634 ORTHO05D006926 1.3e-89 333.2 186 91.9
FAN10G1744 Fragaria x ananassa HOM05D005634 ORTHO05D006926 6.5e-89 330.9 186 90.9
FAN01G0994 Fragaria x ananassa HOM05D005634 ORTHO05D006926 2.5e-88 328.9 186 91.9
QL09p007605 Quercus lobata HOM05D005634 ORTHO05D006926 9.7e-77 290.4 197 78.2
Prupe.2G315600 Prunus persica HOM05D005634 ORTHO05D006926 3.7e-76 288.5 190 80.0
MD01G1225500 Malus domestica HOM05D005634 ORTHO05D006926 2.2e-73 279.3 192 78.1
CiPaw.05G201100 Carya illinoinensis HOM05D005634 ORTHO05D006926 3.8e-73 278.5 199 74.9
Cfa016192 Carpinus fangiana HOM05D005634 ORTHO05D006926 5.0e-73 278.1 197 74.6
MD07G1296000 Malus domestica HOM05D005634 ORTHO05D006926 5.0e-73 278.1 197 78.7
Atru.chr12.2317 Acer truncatum HOM05D005634 ORTHO05D006926 1.9e-72 276.2 197 77.2
FvH4_7g32420 Fragaria vesca HOM05D005634 ORTHO05D006926 2.5e-72 275.8 158 90.5
CsaV3_3G019650 Cucumis sativus L. HOM05D005634 ORTHO05D006926 5.5e-72 274.6 195 75.4
GSVIVG01038606001 Vitis vinifera HOM05D005634 ORTHO05D006926 5.5e-72 274.6 188 76.1
MELO3C019382.2 Cucumis melo HOM05D005634 ORTHO05D006926 1.6e-71 273.1 187 78.1
Lalb_Chr08g0239991 Lupinus albus HOM05D005634 ORTHO05D006926 1.6e-71 273.1 192 73.4
Lalb_Chr11g0067121 Lupinus albus HOM05D005634 ORTHO05D006926 1.0e-70 270.4 192 71.9
Potri.012G020700 Populus trichocarpa HOM05D005634 ORTHO05D006926 1.0e-70 270.4 197 74.1
Ciclev10021946m.g Citrus clementina HOM05D005634 ORTHO05D006926 3.0e-70 268.9 199 72.9
Potri.015G008000 Populus trichocarpa HOM05D005634 ORTHO05D006926 6.8e-70 267.7 178 78.7
Glyma.04G232400 Glycine max HOM05D005634 ORTHO05D006926 5.7e-69 264.6 192 70.8
CSS0047779 Camellia sinensis var. sinensis HOM05D005634 ORTHO05D006926 7.5e-69 264.2 185 75.1
Manes.01G037500 Manihot esculenta HOM05D005634 ORTHO05D006926 7.5e-69 264.2 189 75.1
Sabra12G0012500 Salix brachista HOM05D005634 ORTHO05D006926 1.7e-68 263.1 207 70.0
Sabra15G0006100 Salix brachista HOM05D005634 ORTHO05D006926 1.7e-68 263.1 207 71.5
VMungo1309G1289 Vigna mungo HOM05D005634 ORTHO05D006926 2.2e-68 262.7 192 70.3
Phvul.009G048400 Phaseolus vulgaris HOM05D005634 ORTHO05D006926 4.8e-68 261.5 183 74.3
Lj1g0021546 Lotus japonicus HOM05D005634 ORTHO05D006926 8.3e-68 260.8 193 72.5
Sabra05G0139500 Salix brachista HOM05D005634 ORTHO05D006926 1.1e-67 260.4 199 71.9
Actinidia18672 Actinidia chinensis HOM05D005634 ORTHO05D006926 1.4e-67 260.0 194 72.2
arahy.Tifrunner.gnm1.ann1.P45MK1 Arachis hypogaea HOM05D005634 ORTHO05D006926 1.4e-67 260.0 186 72.0
vmacro10142 Vaccinium macrocarpon HOM05D005634 ORTHO05D006926 1.8e-67 259.6 197 71.1
arahy.Tifrunner.gnm1.ann1.WWF9U9 Arachis hypogaea HOM05D005634 ORTHO05D006926 2.4e-67 259.2 186 72.0
Glyma.06G132600 Glycine max HOM05D005634 ORTHO05D006926 2.4e-67 259.2 192 69.3
Glyma.14G118100 Glycine max HOM05D005634 ORTHO05D006926 3.1e-67 258.8 189 71.4
Thecc.03G204700 Theobroma cacao HOM05D005634 ORTHO05D006926 4.1e-67 258.5 197 70.6
Duzib084G0100 Durio zibethinus HOM05D005634 ORTHO05D006926 3.5e-66 255.4 187 73.8
COL.COLO4_16824 Corchorus olitorius HOM05D005634 ORTHO05D006926 5.9e-66 254.6 196 70.4
Eucgr.K00410 Eucalyptus grandis HOM05D005634 ORTHO05D006926 5.9e-66 254.6 198 69.2
CANSAT21G2451 Cannabis sativa HOM05D005634 ORTHO05D006926 7.7e-66 254.2 198 69.7
Ca_16737_v3 Cicer arietinum L. HOM05D005634 ORTHO05D006926 7.7e-66 254.2 192 68.2
PGR142G2679 Punica granatum HOM05D005634 ORTHO05D006926 7.7e-66 254.2 198 69.7
Oeu037042.1 Olea europaea HOM05D005634 ORTHO05D006926 2.9e-65 252.3 189 69.8
Psat5g074680 Pisum sativum HOM05D005634 ORTHO05D006926 8.6e-65 250.8 163 75.5
Sed0004447 Sechium edule HOM05D005634 ORTHO05D006926 1.1e-64 250.4 187 72.7
ECA233G0867 Erigeron canadensis HOM05D005634 ORTHO05D006926 2.5e-64 249.2 198 66.7
Cpa.g.sc3.123 Carica papaya HOM05D005634 ORTHO05D006926 3.2e-64 248.8 195 68.7
EL10Ac3g05237 Beta vulgaris HOM05D005634 ORTHO05D006926 5.5e-64 248.1 195 67.2
TWI39G0994 Tripterygium wilfordii HOM05D005634 ORTHO05D006926 7.2e-64 247.7 198 68.2
AUR62035571 Chenopodium quinoa HOM05D005634 ORTHO05D006926 1.6e-63 246.5 194 66.5
Oeu061008.1 Olea europaea HOM05D005634 ORTHO05D006926 1.6e-63 246.5 189 68.8
Gohir.D08G113300 Gossypium hirsutum HOM05D005634 ORTHO05D006926 2.1e-63 246.1 161 78.3
AUR62006058 Chenopodium quinoa HOM05D005634 ORTHO05D006926 3.6e-63 245.4 195 66.7
Aqoxy5G04258 Aquilegia oxysepala HOM05D005634 ORTHO05D006926 6.1e-63 244.6 184 70.7
CDE09G0596 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 6.1e-63 244.6 187 69.0
Gorai.004G122200 Gossypium raimondii HOM05D005634 ORTHO05D006926 1.8e-62 243.0 162 78.4
Gohir.A08G102100 Gossypium hirsutum HOM05D005634 ORTHO05D006926 2.3e-62 242.7 161 77.0
MBI12_g30967_MAGBIO Magnolia biondii HOM05D005634 ORTHO05D006926 2.3e-62 242.7 162 76.5
Ah.07g205160 Amaranthus hybridus HOM05D005634 ORTHO05D006926 5.2e-62 241.5 193 66.3
Cc02_g01130 Coffea canephora HOM05D005634 ORTHO05D006926 5.2e-62 241.5 167 70.7
TAR629G3370 Trochodendron aralioides HOM05D005634 ORTHO05D006926 6.8e-62 241.1 197 68.0
SGA_v2.0_scaffold18G08443 Striga asiatica HOM05D002361 ORTHO05D006926 8.8e-62 240.7 163 72.4
Nitab4.5_0000015g0180 Nicotiana tabacum HOM05D005634 ORTHO05D006926 2.0e-61 239.6 188 68.6
DCAR_014553 Daucus carota HOM05D005634 ORTHO05D006926 2.6e-61 239.2 195 65.1
HanXRQChr06g0175631 Helianthus annuus HOM05D005634 ORTHO05D006926 5.7e-61 238.0 197 66.0
Peaxi162Scf00618g00219 Petunia axillaris HOM05D005634 ORTHO05D006926 7.5e-61 237.7 193 65.8
Migut.F00174 Erythranthe guttata HOM05D005634 ORTHO05D006926 9.8e-61 237.3 186 68.8
Medtr3g092040 Medicago truncatula HOM05D005634 ORTHO05D006926 1.7e-60 236.5 180 66.7
Nn1g00367 Nelumbo nucifera HOM05D005634 ORTHO05D006926 1.7e-60 236.5 178 70.8
PSO782G0763 Papaver somniferum HOM05D005634 ORTHO05D006926 3.7e-60 235.3 184 68.5
ATR0620G015 Amborella trichopoda HOM05D005634 ORTHO05D006926 4.9e-60 235.0 139 82.0
Lsat_1_v5_gn_8_5560 Lactuca sativa HOM05D005634 ORTHO05D006926 4.9e-60 235.0 194 64.4
MSTRG.27003 Avicennia marina HOM05D005634 ORTHO05D006926 6.3e-60 234.6 185 67.0
Nitab4.5_0001829g0010 Nicotiana tabacum HOM05D005634 ORTHO05D006926 1.4e-59 233.4 191 65.4
Haze_00263 Corylus avellana HOM05D005634 ORTHO05D006926 2.4e-59 232.6 123 91.9
Rhsim09G0207900 Rhododendron simsii HOM05D005634 ORTHO05D006926 5.4e-59 231.5 213 62.4
Solyc06g053140.3 Solanum lycopersicum HOM05D005634 ORTHO05D006926 5.4e-59 231.5 189 66.1
Carub.0007s1312 Capsella rubella HOM05D005634 ORTHO05D006926 7.0e-59 231.1 185 67.6
Dinv29241 Davidia involucrata HOM05D005634 ORTHO05D006926 1.2e-58 230.3 181 69.6
Sopen06g018200 Solanum pennellii HOM05D005634 ORTHO05D006926 1.6e-58 229.9 192 66.7
PGSC0003DMG400005464 Solanum tuberosum HOM05D005634 ORTHO05D006926 2.7e-58 229.2 194 64.4
Lj3A901T75 Lonicera japonica HOM05D005634 ORTHO05D006926 3.5e-58 228.8 123 89.4
Os09g0530000 Oryza sativa ssp. japonica HOM05D005634 ORTHO05D006926 3.5e-58 228.8 184 63.0
CDE11G0057 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 7.8e-58 227.6 124 87.1
CAN.G414.9 Capsicum annuum HOM05D005634 ORTHO05D006926 2.3e-57 226.1 193 64.2
unitig_0.g1985 Utricularia gibba HOM05D005634 ORTHO05D006926 2.3e-57 226.1 137 78.8
Aa31LG11G15270 Aethionema arabicum HOM05D005634 ORTHO05D006926 5.0e-57 224.9 146 74.7
Thhalv10026171m.g Eutrema salsugineum HOM05D005634 ORTHO05D006926 1.5e-56 223.4 137 77.4
Sc25g0000970 Simmondsia chinensis HOM05D005634 ORTHO05D006926 1.9e-56 223.0 182 63.2
A01p19140 Brassica napus HOM05D005634 ORTHO05D006926 2.5e-56 222.6 145 75.9
SalBow4G1390 Salvia bowleyana HOM05D005634 ORTHO05D006926 4.3e-56 221.9 123 87.0
BraA01t01856Z Brassica rapa HOM05D005634 ORTHO05D006926 5.6e-56 221.5 145 75.2
AL7G24960 Arabidopsis lyrata HOM05D005634 ORTHO05D006926 1.2e-55 220.3 186 64.0
BcaC09g50547 Brassica carinata HOM05D005634 ORTHO05D006926 4.7e-55 218.4 186 64.0
C01p24050 Brassica napus HOM05D005634 ORTHO05D006926 4.7e-55 218.4 186 64.0
BolC1t02361H Brassica oleracea HOM05D005634 ORTHO05D006926 4.7e-55 218.4 186 64.0
THA.LOC104799954 Tarenaya hassleriana HOM05D005634 ORTHO05D006926 8.0e-55 217.6 185 62.7
ClCG05G009130 Citrullus lanatus HOM05D005634 ORTHO05D006926 1.4e-54 216.9 204 63.2
AT4G27700 Arabidopsis thaliana HOM05D005634 ORTHO05D006926 1.8e-54 216.5 186 63.4
BcaNung01637 Brassica carinata HOM05D005634 ORTHO05D006926 5.2e-54 214.9 187 62.0
CARHR235430 Cardamine hirsuta HOM05D005634 ORTHO05D006926 2.6e-53 212.6 187 63.1
SEGI_37163 Sequoiadendron giganteum HOM05D005634 ORTHO05D006926 5.9e-50 201.4 139 69.8
Sp7g25680 Schrenkiella parvula HOM05D005634 ORTHO05D006926 7.3e-48 194.5 185 61.1
Hund21024 Selenicereus undatus HOM05D005634 ORTHO05D006926 2.1e-47 193.0 272 43.8
Zm00001eb319210 Zea mays HOM05D005634 ORTHO05D006926 2.8e-47 192.6 154 64.9
Mapoly0050s0021 Marchantia polymorpha HOM05D005634 ORTHO05D006926 1.1e-46 190.7 141 66.0
SMO141G0293 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 4.0e-46 188.7 137 65.0
AagrBONN_evm.TU.Sc2ySwM_344.430 Anthoceros agrestis HOM05D005634 ORTHO05D006926 2.6e-45 186.0 162 60.5
Dinv35363 Davidia involucrata HOM05D005634 ORTHO05D006926 4.9e-44 181.8 161 63.4
Pp3c15_4960 Physcomitrium patens HOM05D005634 ORTHO05D006926 2.1e-39 166.4 136 60.3
TPR.G33661 Trifolium pratense HOM05D005634 ORTHO05D006926 4.7e-39 165.2 127 66.9
BcaC03g17858 Brassica carinata HOM05D005634 ORTHO05D006926 2.1e-34 149.8 103 68.0
CBR_g3780 Chara braunii HOM05D005634 ORTHO05D006926 2.1e-34 149.8 133 54.9
A07p23910 Brassica napus HOM05D005634 ORTHO05D006926 6.8e-30 134.8 86 73.3
BraA10t44343Z Brassica rapa HOM05D005634 ORTHO05D006926 6.8e-30 134.8 86 73.3
BcaC01g00747 Brassica carinata HOM05D005634 ORTHO05D006926 3.3e-24 115.9 70 74.3
HPP92_002499 Vanilla planifolia HOM05D005634 ORTHO05D006926 4.3e-24 115.5 71 73.2
Hma1.2p1_0512F.1_g169290 Hydrangea macrophylla HOM05D005634 ORTHO05D006926 1.4e-22 110.5 124 58.1
FAN10G2388 Fragaria x ananassa HOM05D005634 ORTHO05D006926 1.0e-17 94.4 66 77.3
Cre16.g650050 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 5.6e-16 88.6 101 40.6
C03p83850 Brassica napus HOM05D005634 ORTHO05D006926 3.2e-11 72.8 57 63.2
C09p11080 Brassica napus HOM05D005634 ORTHO05D006926 3.2e-11 72.8 57 63.2
BolC3t20661H Brassica oleracea HOM05D005634 ORTHO05D006926 3.2e-11 72.8 57 63.2
C02p59000 Brassica napus HOM05D005634 ORTHO05D006926 5.4e-11 72.0 57 61.4
BolC2t11955H Brassica oleracea HOM05D005634 ORTHO05D006926 5.4e-11 72.0 57 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2890 Anthoceros agrestis HOM05D005634 ORTHO05D006926 1.3e-09 67.4 113 33.6
Cre01.g003550 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 8.7e-09 64.7 113 38.1
Lj1g0008226 Lotus japonicus HOM05D006381 ORTHO05D008523 1.9e-08 63.5 130 31.5
Mapoly0035s0022 Marchantia polymorpha HOM05D005634 ORTHO05D006926 9.6e-08 61.2 120 26.7
Sed0006401 Sechium edule HOM05D002957 ORTHO05D009332 1.6e-07 60.5 126 29.4
Potri.006G100600 Populus trichocarpa HOM05D002957 ORTHO05D009332 2.8e-07 59.7 117 32.5
PSO339G4196 Papaver somniferum HOM05D002957 ORTHO05D009332 3.7e-07 59.3 109 27.5
Rhsim03G0009200 Rhododendron simsii HOM05D006381 ORTHO05D008523 4.8e-07 58.9 109 33.0
vmacro07936 Vaccinium macrocarpon HOM05D006381 ORTHO05D008523 4.8e-07 58.9 109 33.0
Aqoxy2G00881 Aquilegia oxysepala HOM05D002957 ORTHO05D009332 8.1e-07 58.2 117 29.9
CANSAT35G0815 Cannabis sativa HOM05D002957 ORTHO05D009332 1.4e-06 57.4 147 30.6
MELO3C009019.2 Cucumis melo HOM05D006381 ORTHO05D008523 1.4e-06 57.4 110 28.2
DCAR_024020 Daucus carota HOM05D002957 ORTHO05D009332 1.4e-06 57.4 168 28.0
Glyma.19G145800 Glycine max HOM05D006381 ORTHO05D008523 1.4e-06 57.4 131 30.5
Ciclev10012632m.g Citrus clementina HOM05D006381 ORTHO05D008523 1.8e-06 57.0 109 29.4
SMO169G0172 Selaginella moellendorffii HOM05D005634 ORTHO05D006926 1.8e-06 57.0 97 33.0
Ca_08505_v3 Cicer arietinum L. HOM05D006381 ORTHO05D008523 2.4e-06 56.6 110 30.0
Thecc.05G168200 Theobroma cacao HOM05D006381 ORTHO05D008523 2.4e-06 56.6 109 29.4
Lsat_1_v5_gn_9_27981 Lactuca sativa HOM05D006381 ORTHO05D008523 3.1e-06 56.2 110 30.0
Hund19189 Selenicereus undatus HOM05D006381 ORTHO05D008523 3.1e-06 56.2 106 30.2
BcaC05g29625 Brassica carinata HOM05D002957 ORTHO05D009332 4.0e-06 55.8 117 31.6
A05p39930 Brassica napus HOM05D002957 ORTHO05D009332 4.0e-06 55.8 117 31.6
C05p58970 Brassica napus HOM05D002957 ORTHO05D009332 4.0e-06 55.8 117 31.6
Medtr7g092820 Medicago truncatula HOM05D006381 ORTHO05D008523 4.0e-06 55.8 126 27.8
AL3G19920 Arabidopsis lyrata HOM05D002957 ORTHO05D009332 5.3e-06 55.5 117 31.6
Manes.08G046500 Manihot esculenta HOM05D006381 ORTHO05D008523 5.3e-06 55.5 108 28.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-06 55.5 133 27.8
BraSC256t45931Z Brassica rapa HOM05D002957 ORTHO05D009332 9.0e-06 54.7 117 30.8
Manes.08G092300 Manihot esculenta HOM05D002957 ORTHO05D009332 9.0e-06 54.7 117 28.2


User provided reference genes

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