Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 0.0e+00 1708.0 845 100.0
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 0.0e+00 1239.6 710 86.1
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 0.0e+00 1171.0 716 80.7
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.3e-301 1039.6 724 70.3
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 8.0e-288 993.8 610 80.8
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.8e-287 992.6 636 78.3
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 4.0e-287 991.5 610 80.7
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 3.4e-286 988.4 703 69.7
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 5.2e-263 911.4 706 61.9
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 3.2e-260 902.1 709 61.6
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 2.8e-256 889.0 705 61.1
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 1.5e-254 883.2 707 60.8
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 7.8e-251 870.9 718 59.3
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 2.5e-249 865.9 706 60.8
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 2.1e-243 846.3 711 57.8
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 6.0e-243 844.7 704 58.9
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 1.8e-242 843.2 705 59.7
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 3.0e-242 842.4 705 58.4
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 6.7e-242 841.3 706 59.2
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.5e-241 839.3 762 55.9
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 2.5e-241 839.3 710 59.9
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.6e-240 836.6 707 58.4
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 2.8e-240 835.9 703 59.5
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 1.1e-239 833.9 712 57.9
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 1.1e-239 833.9 707 58.3
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 1.5e-238 830.1 715 58.9
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 2.2e-237 826.2 714 58.4
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 4.9e-237 825.1 819 53.4
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 1.1e-231 807.4 607 65.1
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 1.4e-231 807.0 706 57.6
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 6.5e-229 798.1 715 55.7
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.6e-227 793.5 708 56.1
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 6.0e-227 791.6 756 54.6
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 3.0e-226 789.3 729 56.1
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 1.5e-225 786.9 703 55.5
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 3.3e-225 785.8 693 56.4
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 9.7e-225 784.3 721 56.2
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 8.2e-224 781.2 705 56.0
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.7e-221 773.5 719 54.8
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.2e-219 767.3 711 54.0
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 9.7e-217 757.7 713 52.3
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 1.3e-216 757.3 695 55.1
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 6.3e-216 755.0 721 52.1
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 2.6e-214 749.6 705 52.8
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 1.0e-213 747.7 873 48.0
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 1.3e-213 747.3 789 51.8
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 6.5e-213 745.0 690 54.6
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 5.5e-212 741.9 732 54.5
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 7.2e-212 741.5 740 52.4
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 3.6e-211 739.2 708 52.4
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 2.3e-210 736.5 705 51.5
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 2.6e-209 733.0 702 53.4
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 5.7e-209 731.9 705 51.1
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 1.7e-208 730.3 719 51.7
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 5.3e-207 725.3 716 52.7
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 5.3e-207 725.3 814 50.6
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 2.0e-206 723.4 709 52.2
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 1.3e-205 720.7 758 51.3
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 1.3e-205 720.7 866 46.7
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 7.2e-204 714.9 743 49.8
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 4.4e-201 705.7 712 50.8
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 5.7e-201 705.3 712 50.6
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 5.7e-201 705.3 712 50.6
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 1.7e-200 703.7 889 43.8
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 4.8e-200 702.2 602 58.0
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 3.8e-197 692.6 711 49.1
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 2.8e-192 676.4 721 49.0
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 6.3e-192 675.2 709 49.1
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 3.1e-191 672.9 665 51.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.7e-184 649.4 701 49.4
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 5.9e-182 642.1 828 42.8
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 7.2e-180 635.2 635 52.3
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 1.6e-179 634.0 597 54.1
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 1.4e-178 630.9 604 52.8
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 2.4e-175 620.2 504 60.5
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 1.8e-170 604.0 632 50.3
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 8.3e-168 595.1 704 45.5
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 5.6e-164 582.4 487 58.7
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 2.8e-163 580.1 580 50.5
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 4.7e-163 579.3 511 57.9
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.4e-162 577.8 744 43.4
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 8.3e-160 568.5 703 44.2
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.9e-156 557.4 649 47.0
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.4e-151 541.2 491 57.4
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 3.0e-149 533.5 656 45.4
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 1.4e-146 524.6 483 56.5
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 5.2e-146 522.7 491 56.4
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 5.2e-146 522.7 557 49.0
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.8e-144 516.5 491 55.8
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.5e-142 510.0 491 55.6
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 1.6e-134 484.6 390 58.7
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 1.9e-132 477.6 410 55.6
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 1.7e-128 464.5 395 56.2
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 2.2e-128 464.2 389 57.6
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.9e-124 451.1 735 37.6
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 2.5e-124 450.7 452 50.0
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 5.8e-121 439.5 736 37.1
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 3.2e-119 433.7 400 53.5
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 5.1e-117 426.4 512 45.7
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 3.1e-114 417.2 407 50.6
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 3.4e-113 413.7 594 41.8
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.6e-107 394.8 742 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.1e-103 382.1 739 34.9
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 5.3e-98 363.2 617 36.6
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 6.9e-98 362.8 309 59.2
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 2.6e-97 360.9 311 61.4
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.8e-91 340.1 280 60.4
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 1.3e-88 332.0 282 59.6
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 3.2e-87 327.4 303 57.4
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.3e-80 305.4 241 62.7
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 3.4e-68 264.2 162 77.2
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 4.5e-65 253.8 215 58.1
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 1.0e-64 252.7 247 50.2
Sabra11G0071800 Salix brachista HOM05D001060 ORTHO05D004708 3.3e-63 247.7 247 50.2
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.4e-60 237.3 200 58.0
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 1.1e-58 232.6 200 61.5
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 1.1e-55 222.6 181 63.5
Medtr1g007990 Medicago truncatula HOM05D001081 ORTHO05D004708 7.3e-55 219.9 230 46.1
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 4.4e-52 210.7 171 56.1
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 4.3e-47 194.1 638 28.8
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 3.1e-45 188.0 145 65.5
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 8.9e-45 186.4 171 52.6
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 1.7e-43 182.2 179 50.8
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 1.1e-42 179.5 142 66.2
Pp3c8_21170 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.3e-40 171.8 547 29.1
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 3.9e-40 171.0 181 50.8
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.1e-39 169.5 159 56.6
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 4.0e-37 161.0 171 48.5
Thecc.03G196700 Theobroma cacao HOM05D001081 ORTHO05D004708 6.8e-37 160.2 254 40.6
DCAR_008935 Daucus carota HOM05D001081 ORTHO05D004708 2.6e-36 158.3 238 36.6
FAN01G2325 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.7e-35 155.6 81 87.7
SEGI_37251 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 1.1e-29 136.3 120 56.7
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.1e-26 126.3 107 61.7
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 7.1e-26 123.6 141 42.6
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 1.3e-24 119.4 132 46.2
Sopen03g022620 Solanum pennellii HOM05D001081 ORTHO05D004708 1.3e-24 119.4 84 64.3
Duzib205G2059 Durio zibethinus HOM05D001081 ORTHO05D004708 2.1e-22 112.1 124 50.0
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 2.4e-21 108.6 150 40.7
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 3.4e-20 104.8 113 50.4
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 5.8e-20 104.0 71 73.2
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 1.7e-19 102.4 131 44.3
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 3.8e-19 101.3 177 32.8
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 4.2e-18 97.8 71 70.4
Hma1.2p1_0404F.1_g145360 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 3.5e-17 94.7 88 44.3
SEGI_22535 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 1.7e-16 92.4 99 45.5
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 5.1e-16 90.9 128 43.0
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 6.6e-16 90.5 153 35.9
Lsat_1_v5_gn_0_23101 Lactuca sativa HOM05D001081 ORTHO05D013496 1.5e-15 89.4 157 36.9
Lalb_Chr10g0091351 Lupinus albus HOM05D001081 ORTHO05D004708 5.6e-15 87.4 105 43.8
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.3e-14 86.3 47 83.0
Lsat_1_v5_gn_8_60400 Lactuca sativa HOM05D001081 ORTHO05D001168 3.6e-14 84.7 113 39.8
SEGI_17438 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 1.1e-13 83.2 195 28.2
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 1.8e-13 82.4 75 57.3
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.6e-12 78.6 59 69.5
Sopen03g022910 Solanum pennellii HOM05D001081 ORTHO05D004708 2.2e-11 75.5 118 38.1
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 2.1e-09 68.9 47 70.2
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 4.6e-09 67.8 126 35.7
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 4.3e-07 61.2 57 56.1
MBI15_g44046_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 5.6e-07 60.8 45 62.2
EL10Ac9g22095 Beta vulgaris HOM05D001081 ORTHO05D004708 9.6e-07 60.1 108 39.8
Cpa.g.sc3.90 Carica papaya HOM05D000004 ORTHO05D000002 9.6e-07 60.1 46 63.0
Lsat_1_v5_gn_3_127020 Lactuca sativa HOM05D001700 ORTHO05D004708 2.1e-06 58.9 46 58.7


User provided reference genes

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