Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.3e-68 261.2 129 100.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.5e-65 251.1 129 96.1
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.5e-65 251.1 129 96.1
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-64 249.6 129 95.3
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-64 249.6 129 95.3
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.9e-64 248.4 129 95.3
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-63 246.5 129 94.6
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.1e-62 240.7 129 93.0
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 3.1e-58 228.4 127 86.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.5e-57 226.1 125 88.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.0e-57 225.7 129 86.8
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.6e-57 225.3 127 86.6
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 85.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.2e-56 222.2 127 84.3
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 84.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 84.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 83.5
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.9e-56 221.9 124 87.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 6.5e-56 220.7 128 82.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 6.5e-56 220.7 125 85.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 83.5
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 83.5
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 84.3
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 85.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.4e-55 219.5 127 82.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.5e-55 218.8 124 83.9
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 82.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 83.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.5e-55 218.8 127 84.3
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 3.2e-55 218.4 118 89.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.2e-55 218.4 127 81.9
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 4.2e-55 218.0 118 89.8
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.2e-55 218.0 127 81.9
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 4.2e-55 218.0 127 81.9
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 9.4e-55 216.9 127 81.1
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 82.7
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 81.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.7e-54 215.3 127 80.3
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 128 80.5
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.1e-54 214.2 124 81.5
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 79.5
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 79.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 7.9e-54 213.8 124 80.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.9e-54 213.8 124 82.3
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 78.7
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 80.3
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.4e-53 213.0 124 81.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.4e-53 213.0 124 79.8
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 79.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.8e-53 212.6 122 83.6
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 81.1
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 78.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 79.5
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 80.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 78.7
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 78.7
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.5e-52 209.5 124 79.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 80.3
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.6e-52 208.8 127 78.7
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 4.4e-52 208.0 125 80.8
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.9
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 81.1
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 4.4e-52 208.0 128 78.9
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 79.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 5.7e-52 207.6 125 80.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 78.0
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 9.7e-52 206.8 123 79.7
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 79.8
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 78.2
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 78.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 80.6
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 78.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.8e-51 205.3 128 78.9
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 124 77.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.8e-51 204.5 128 79.7
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.3e-51 204.1 125 77.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.3e-51 204.1 124 78.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 77.2
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 78.9
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 77.3
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.8e-50 202.6 125 78.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 75.8
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 79.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 75.6
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 75.6
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 7.0e-50 200.7 127 74.8
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 7.0e-50 200.7 127 75.6
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 9.1e-50 200.3 127 75.6
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 9.1e-50 200.3 125 75.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 75.6
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 75.6
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 75.6
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 76.4
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 76.4
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 75.6
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 74.8
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 74.8
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.5e-49 198.4 124 74.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.7e-48 196.1 128 75.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.8e-48 194.9 120 75.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 5.0e-48 194.5 120 74.2
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 6.5e-48 194.1 127 72.4
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.5e-47 193.0 128 73.4
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 4.2e-47 191.4 127 73.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.2e-47 191.4 124 71.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.2e-46 189.9 120 73.3
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.8e-45 186.0 127 73.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.3e-44 181.8 171 57.3
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.7e-43 179.5 109 74.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.3e-43 177.6 106 81.1
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.1e-42 176.8 125 72.8
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 5.5e-39 164.5 112 71.4
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 5.5e-39 164.5 128 68.0
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 2.7e-38 162.2 87 93.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.4e-34 149.8 103 72.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 8.6e-32 140.6 82 75.6
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-29 132.9 82 76.8
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.1e-26 121.7 73 82.2
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.5e-25 118.6 98 60.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.0e-24 117.1 127 53.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.3e-24 115.9 76 72.4
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 2.5e-23 112.5 86 60.5
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-22 109.8 67 79.1
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 6.1e-22 107.8 89 60.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.0e-21 105.1 67 77.6
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.2e-19 99.4 60 80.0
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 7.0e-18 94.4 56 82.1
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.0e-17 92.8 82 52.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 5.9e-17 91.3 51 90.2
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.1e-14 82.8 81 50.6
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.2e-12 77.0 116 45.7
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.0e-08 63.9 45 57.8
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.3e-08 62.8 36 77.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.3e-07 58.9 39 66.7


User provided reference genes

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