Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 6.5e-227 790.4 409 100.0
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.0e-220 768.8 409 96.1
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.5e-220 767.7 409 96.1
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.2e-218 761.1 409 95.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.4e-218 760.0 409 95.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-216 755.0 409 94.6
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.5e-194 682.9 409 85.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 6.4e-190 667.5 409 82.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-189 665.2 409 83.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-189 665.2 409 83.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.5e-178 629.0 409 79.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.8e-176 622.9 410 77.3
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.0e-175 619.4 409 77.0
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-173 613.6 409 75.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.1e-173 613.6 409 75.6
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-173 613.6 409 76.8
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.4e-173 613.2 404 78.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 5.4e-173 611.3 409 76.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.2e-172 610.1 409 77.0
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.5e-172 608.6 409 76.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.0e-171 607.1 404 77.0
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.3e-171 605.9 424 74.1
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 3.0e-171 605.5 410 76.8
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.5e-170 603.2 409 75.3
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 4.3e-170 601.7 409 74.6
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 5.6e-170 601.3 409 75.8
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.1e-169 599.4 412 76.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.8e-169 599.0 410 75.9
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.7e-169 598.2 409 73.3
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 6.2e-169 597.8 404 76.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.1e-169 597.4 409 73.3
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 8.1e-169 597.4 409 73.3
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.4e-168 595.9 403 75.7
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 4.0e-168 595.1 409 74.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 9.0e-168 594.0 409 74.3
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.0e-168 594.0 409 75.3
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.2e-167 593.6 409 75.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.5e-167 593.2 409 73.8
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.0e-167 592.8 409 72.6
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.0e-167 592.8 409 74.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 9.9e-167 590.5 404 75.5
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 9.9e-167 590.5 406 74.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.2e-166 589.3 414 74.9
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 3.8e-166 588.6 404 73.8
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.8e-166 588.6 414 74.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.9e-165 586.3 410 73.4
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.4e-165 585.9 409 72.9
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.2e-165 585.1 410 73.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.2e-165 585.1 393 76.3
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 7.1e-165 584.3 411 73.2
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 9.3e-165 583.9 409 73.3
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.2e-164 583.6 407 74.9
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.2e-164 583.6 410 74.4
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.7e-164 582.4 409 73.3
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.7e-164 582.4 409 73.3
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.6e-164 581.6 404 73.5
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 7.8e-164 580.9 407 74.0
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.7e-163 579.7 409 72.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.0e-163 578.9 409 72.1
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.1e-162 577.0 409 71.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.5e-162 575.9 410 72.0
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 4.3e-162 575.1 405 72.6
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 9.6e-162 573.9 414 72.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-161 573.5 409 73.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.6e-161 573.2 409 72.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-161 572.0 404 72.5
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.4e-160 570.1 408 73.5
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.8e-160 569.7 405 71.9
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 5.3e-160 568.2 444 66.7
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.9e-160 567.8 410 72.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 5.8e-159 564.7 415 72.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 5.8e-159 564.7 406 72.2
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 2.2e-158 562.8 406 71.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 2.9e-158 562.4 406 72.2
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.8e-158 562.0 405 72.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 9.3e-157 557.4 410 70.5
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 9.3e-157 557.4 408 70.3
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.2e-156 557.0 410 71.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.2e-156 557.0 457 66.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.2e-156 557.0 455 65.3
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.6e-156 556.6 410 71.5
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.7e-156 555.8 405 69.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-154 550.4 410 70.5
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.1e-154 550.4 447 67.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.1e-154 550.4 404 69.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.5e-154 550.1 410 70.5
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.9e-154 549.7 404 71.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.3e-154 548.9 415 68.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.6e-154 548.1 416 69.7
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.6e-154 548.1 409 69.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.6e-154 547.4 410 69.0
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 9.6e-154 547.4 407 69.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.3e-153 547.0 402 68.9
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.6e-153 546.6 409 69.7
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.6e-153 546.6 409 69.7
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.1e-153 546.2 410 70.0
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.1e-153 546.2 405 70.9
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.2e-153 544.7 435 66.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.4e-152 543.5 410 70.0
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.8e-152 543.1 410 69.5
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.8e-152 543.1 410 70.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 3.1e-152 542.3 410 70.0
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 5.3e-152 541.6 411 66.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.6e-151 537.7 409 68.0
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 9.9e-151 537.3 412 71.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 4.6e-148 528.5 409 69.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 7.9e-148 527.7 410 68.3
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 7.9e-148 527.7 402 65.9
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 5.1e-147 525.0 409 68.7
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.7e-145 518.8 411 64.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.0e-144 515.4 409 65.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.3e-144 515.0 409 63.6
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-142 510.4 409 67.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.2e-140 503.8 420 64.0
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.5e-140 502.3 405 66.7
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 7.9e-140 501.1 403 62.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.8e-136 490.0 409 60.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.3e-134 483.8 336 74.7
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 8.8e-131 471.1 374 64.4
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.8e-129 465.3 523 52.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.2e-124 450.7 340 68.2
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.6e-124 450.3 378 63.2
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.1e-120 435.6 409 57.7
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 9.1e-120 434.5 298 75.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.7e-116 422.9 446 56.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 8.2e-113 411.4 411 54.5
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 8.2e-113 411.4 411 54.5
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 5.3e-112 408.7 444 54.5
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-109 399.8 408 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 8.3e-97 358.2 404 49.3
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.2e-95 354.4 409 54.5
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.8e-94 349.4 411 47.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-79 300.8 409 47.4
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.7e-79 300.1 207 74.9
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 8.1e-68 261.9 431 39.7
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.9e-65 252.7 362 44.2
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-63 246.5 276 54.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.4e-56 224.6 303 43.9
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.6e-53 212.6 151 74.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-41 172.9 147 66.0
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 3.7e-28 130.2 104 61.5
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 1.5e-26 124.8 422 28.0
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.9e-25 120.6 128 50.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.5e-25 119.4 94 62.8
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.1e-24 118.6 95 60.0
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.6e-23 113.2 85 76.5
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 4.3e-21 106.7 69 75.4
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.8e-20 104.0 191 40.8
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.4e-19 101.7 75 65.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.8e-19 101.3 439 25.1
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.7e-18 95.9 395 26.8
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.5e-16 90.9 62 74.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.5e-16 89.7 70 67.1
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.5e-13 80.9 454 24.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 9.1e-11 72.4 62 61.3
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 5.9e-10 69.7 251 29.1
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 3.0e-06 57.4 54 59.3
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 8.8e-06 55.8 85 44.7
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 8.8e-06 55.8 28 82.1


User provided reference genes

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