Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379911 Rosa chinensis HOM05D000832 ORTHO05D015138 3.8e-48 194.5 97 100.0
RcHm_v2.0_Chr6g0312331 Rosa chinensis HOM05D000832 ORTHO05D015138 1.3e-19 99.8 58 87.9
RcHm_v2.0_Chr1g0330331 Rosa chinensis HOM05D000832 ORTHO05D015138 1.2e-14 83.2 51 86.3
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 1.3e-08 63.2 51 62.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.3e-08 63.2 51 62.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.3e-08 63.2 51 62.7
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.7e-08 62.8 51 62.7
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 1.7e-08 62.8 30 96.7
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 1.7e-08 62.8 30 96.7
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 2.2e-08 62.4 51 60.8
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.2e-08 62.4 51 62.7
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 2.9e-08 62.0 51 60.8
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 2.9e-08 62.0 51 60.8
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 2.9e-08 62.0 51 60.8
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 3.8e-08 61.6 30 93.3
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 3.8e-08 61.6 30 93.3
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 3.8e-08 61.6 51 60.8
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 3.8e-08 61.6 30 93.3
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 60.8
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 5.0e-08 61.2 30 90.0
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 60.8
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 5.0e-08 61.2 51 58.8
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 5.0e-08 61.2 30 93.3
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 6.5e-08 60.8 29 96.6
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 8.5e-08 60.5 51 58.8
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 8.5e-08 60.5 29 93.1
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 8.5e-08 60.5 30 90.0
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 8.5e-08 60.5 30 90.0
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 8.5e-08 60.5 30 90.0
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 8.5e-08 60.5 30 90.0
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 8.5e-08 60.5 30 93.3
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 8.5e-08 60.5 51 58.8
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 8.5e-08 60.5 51 58.8
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.1e-07 60.1 51 58.8
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.1e-07 60.1 51 58.8
Glyma.02G118116 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Glyma.02G118148 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Glyma.02G118196 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Glyma.02G118244 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Glyma.02G130816 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Glyma.02G130848 Glycine max HOM05D000832 ORTHO05D015138 1.1e-07 60.1 30 90.0
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 1.1e-07 60.1 51 54.9
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 1.1e-07 60.1 30 90.0
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 1.1e-07 60.1 51 58.8
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 1.4e-07 59.7 29 93.1
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 1.4e-07 59.7 51 56.9
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 1.4e-07 59.7 30 90.0
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 1.4e-07 59.7 29 93.1
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 1.9e-07 59.3 30 86.7
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 1.9e-07 59.3 51 56.9
RcHm_v2.0_Chr4g0407141 Rosa chinensis HOM05D000832 ORTHO05D015138 1.9e-07 59.3 39 76.9
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.9e-07 59.3 34 88.2
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 1.9e-07 59.3 51 58.8
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.5e-07 58.9 29 93.1
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 2.5e-07 58.9 30 90.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 2.5e-07 58.9 62 51.6
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 2.5e-07 58.9 51 56.9
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 2.5e-07 58.9 30 86.7
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 2.5e-07 58.9 51 58.8
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 2.5e-07 58.9 30 90.0
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 3.2e-07 58.5 28 96.4
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 3.2e-07 58.5 30 90.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 3.2e-07 58.5 51 56.9
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 3.2e-07 58.5 30 90.0
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 3.2e-07 58.5 30 90.0
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 3.2e-07 58.5 51 56.9
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 3.2e-07 58.5 51 56.9
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 4.2e-07 58.2 51 54.9
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 4.2e-07 58.2 30 86.7
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 4.2e-07 58.2 30 86.7
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 4.2e-07 58.2 30 86.7
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 5.5e-07 57.8 30 90.0
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 5.5e-07 57.8 30 86.7
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 5.5e-07 57.8 30 83.3
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 7.2e-07 57.4 29 89.7
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 7.2e-07 57.4 51 54.9
Psat0s1185g0040 Pisum sativum HOM05D000832 ORTHO05D000982 7.2e-07 57.4 51 54.9
Psat6g187920 Pisum sativum HOM05D000832 ORTHO05D000982 7.2e-07 57.4 51 54.9
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 7.2e-07 57.4 30 90.0
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 7.2e-07 57.4 29 86.2
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 7.2e-07 57.4 28 92.9
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 9.3e-07 57.0 30 83.3
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 9.3e-07 57.0 30 83.3
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 9.3e-07 57.0 30 86.7
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 1.2e-06 56.6 28 92.9
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.2e-06 56.6 30 83.3
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.2e-06 56.6 30 83.3
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 1.2e-06 56.6 30 86.7
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 1.2e-06 56.6 30 83.3
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 1.2e-06 56.6 51 52.9
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.6e-06 56.2 51 54.9
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 1.6e-06 56.2 28 89.3
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 1.6e-06 56.2 30 86.7
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 1.6e-06 56.2 29 86.2
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 1.6e-06 56.2 51 52.9
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.6e-06 56.2 28 89.3
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 2.1e-06 55.8 30 83.3
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 2.1e-06 55.8 28 89.3
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 2.1e-06 55.8 30 83.3
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.1e-06 55.8 30 83.3
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 2.1e-06 55.8 28 89.3
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 2.1e-06 55.8 51 54.9
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 2.1e-06 55.8 30 83.3
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 2.7e-06 55.5 28 89.3
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 2.7e-06 55.5 30 83.3
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 2.7e-06 55.5 30 83.3
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 2.7e-06 55.5 66 43.9
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 2.7e-06 55.5 29 82.8
RcHm_v2.0_Chr5g0035591 Rosa chinensis HOM05D000832 ORTHO05D348372 2.7e-06 55.5 28 89.3
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 2.7e-06 55.5 35 74.3
AagrBONN_evm.TU.Sc2ySwM_344.1213 Anthoceros agrestis HOM05D000832 ORTHO05D000982 4.6e-06 54.7 51 51.0
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 4.6e-06 54.7 28 89.3
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 4.6e-06 54.7 28 85.7
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.6e-06 54.7 30 76.7
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 4.6e-06 54.7 28 85.7
Medtr1g094000 Medicago truncatula HOM05D000832 ORTHO05D000982 6.1e-06 54.3 35 71.4
Psat5g031640 Pisum sativum HOM05D000832 ORTHO05D015138 6.1e-06 54.3 28 85.7
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 6.1e-06 54.3 35 71.4
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 6.1e-06 54.3 30 83.3
TPR.G27416 Trifolium pratense HOM05D000832 ORTHO05D000982 6.1e-06 54.3 35 71.4
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 6.1e-06 54.3 51 52.9
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 7.9e-06 53.9 51 51.0
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 7.9e-06 53.9 28 85.7


User provided reference genes

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