Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.1e-45 186.4 101 100.0
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.5e-31 138.7 88 85.2
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.3e-31 137.9 88 84.1
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 7.4e-31 137.1 88 84.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 3.7e-30 134.8 88 80.7
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 8.2e-30 133.7 88 84.1
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.4e-29 132.1 82 86.6
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.9e-29 130.6 82 86.6
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.9e-29 130.6 82 86.6
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.5e-28 129.4 88 76.1
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.9e-26 122.5 92 78.3
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 5.5e-26 120.9 95 74.7
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.2e-25 119.8 92 76.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.0e-24 116.7 80 77.5
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.0e-24 116.7 80 77.5
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 1.0e-24 116.7 80 77.5
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.0e-24 116.7 82 76.8
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.4e-24 116.3 80 76.2
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 2.5e-23 112.1 89 70.8
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 4.3e-23 111.3 88 69.3
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.7e-22 109.4 80 77.5
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 1.1e-21 106.7 90 68.9
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 4.1e-21 104.8 80 72.5
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 6.9e-21 104.0 90 70.0
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.9e-19 98.6 88 67.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 3.2e-18 95.1 90 64.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 9.4e-18 93.6 88 64.8
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 2.7e-17 92.0 88 60.2
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.9e-17 90.5 84 63.1
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 7.9e-17 90.5 89 60.7
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.4e-16 89.7 85 65.9
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 3.0e-16 88.6 88 59.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 3.0e-16 88.6 89 60.7
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 3.9e-16 88.2 90 60.0
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 5.1e-16 87.8 88 61.4
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-15 86.7 92 60.9
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-15 86.7 92 60.9
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.5e-15 86.3 84 60.7
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 1.5e-15 86.3 85 60.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 2.0e-15 85.9 76 64.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.0e-15 85.9 89 58.4
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.6e-15 85.5 88 61.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.6e-15 85.5 82 62.2
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.4e-15 84.7 85 60.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.7e-15 84.3 92 59.8
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 7.4e-15 84.0 88 58.0
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.3e-14 83.2 99 56.6
RcHm_v2.0_Chr1g0379811 Rosa chinensis HOM05D000121 ORTHO05D013415 1.7e-14 82.8 43 95.3
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.2e-14 82.4 92 62.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.7e-14 81.6 91 58.2
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 2.4e-13 79.0 92 63.0
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.4e-13 79.0 91 59.3
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 5.3e-13 77.8 70 60.0
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 5.3e-13 77.8 88 54.5
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 7.0e-13 77.4 101 52.5
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 7.0e-13 77.4 79 57.0
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 1.6e-12 76.3 94 59.6
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.0e-12 75.9 74 59.5
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.6e-12 75.5 84 53.6
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 3.5e-12 75.1 84 54.8
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 3.5e-12 75.1 82 61.0
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 4.5e-12 74.7 95 48.4
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.3e-11 73.2 71 57.7
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.3e-11 73.2 82 58.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.7e-11 72.8 78 59.0
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 2.2e-11 72.4 88 56.8
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.2e-11 72.4 88 53.4
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.2e-11 72.4 88 53.4
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 2.9e-11 72.0 88 54.5
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 2.9e-11 72.0 88 53.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.9e-11 72.0 78 57.7
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 3.8e-11 71.6 91 49.5
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.8e-11 71.6 84 52.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 5.0e-11 71.2 85 55.3
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 6.5e-11 70.9 80 52.5
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 8.5e-11 70.5 81 50.6
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 8.5e-11 70.5 113 47.8
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-10 70.1 88 53.4
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.5e-10 69.7 89 56.2
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.5e-10 69.7 58 62.1
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.9e-10 69.3 91 52.7
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 1.9e-10 69.3 76 57.9
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 2.5e-10 68.9 88 53.4
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 2.5e-10 68.9 88 53.4
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 2.5e-10 68.9 88 53.4
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.5e-10 68.9 88 53.4
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 2.5e-10 68.9 92 56.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.5e-10 68.9 73 57.5
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 4.2e-10 68.2 80 55.0
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 9.4e-10 67.0 82 54.9
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 9.4e-10 67.0 90 54.4
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 9.4e-10 67.0 75 64.0
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 1.2e-09 66.6 82 53.7
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.2e-09 66.6 88 51.1
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 2.1e-09 65.9 80 51.2
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.1e-09 65.9 66 50.0
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 3.6e-09 65.1 80 52.5
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 4.7e-09 64.7 81 56.8
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 4.7e-09 64.7 80 50.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.0e-09 63.9 88 44.3
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.1e-07 60.1 86 43.0
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 7.5e-07 57.4 84 42.9


User provided reference genes

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