Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 0.0e+00 1738.0 872 100.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 0.0e+00 1420.2 880 82.3
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1417.5 887 81.6
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1411.7 884 81.6
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1410.6 881 82.4
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1407.1 887 81.8
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1403.7 884 81.2
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1103.2 696 80.9
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 0.0e+00 1076.2 897 66.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 2.0e-310 1068.9 890 65.8
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.2e-297 1026.5 897 64.7
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 2.9e-272 942.2 912 58.6
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 6.4e-272 941.0 879 62.0
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.9e-264 915.6 904 58.1
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 4.3e-260 901.7 900 56.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 2.4e-234 816.2 893 54.4
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 2.8e-227 792.7 909 53.9
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 3.2e-223 779.2 900 51.8
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.3e-221 773.9 897 50.9
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 3.9e-221 772.3 899 50.5
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 6.7e-221 771.5 895 53.2
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 9.7e-220 767.7 897 49.8
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.5e-209 733.8 897 50.8
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 6.7e-205 718.4 954 47.2
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.2e-201 707.6 901 49.1
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.6e-201 706.4 902 49.2
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.0e-200 704.5 901 49.2
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 2.1e-190 670.2 898 47.6
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.0e-189 667.9 889 46.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.4e-186 656.8 848 46.7
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.8e-179 633.3 799 48.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 3.1e-178 629.8 902 45.0
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.5e-175 620.2 894 45.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.4e-173 614.4 900 44.9
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.0e-173 612.8 950 43.8
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.2e-172 611.3 950 43.8
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 8.3e-171 605.1 896 43.3
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.1e-170 604.7 900 44.1
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 9.2e-170 601.7 894 44.3
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.0e-168 598.2 886 43.8
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 8.6e-168 595.1 890 44.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.1e-166 590.5 896 42.6
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 1.5e-164 584.3 895 42.8
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.7e-163 579.7 888 43.5
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.3e-160 571.2 899 41.9
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.3e-160 571.2 897 41.7
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 1.1e-159 568.2 893 43.0
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.5e-159 567.0 897 42.7
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.7e-155 554.3 897 42.5
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 2.2e-155 553.9 891 40.3
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.9e-155 553.5 914 42.2
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.4e-154 551.2 891 40.7
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 2.4e-154 550.4 896 42.5
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 9.2e-154 548.5 900 42.4
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.2e-153 548.1 852 42.6
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.6e-153 547.7 892 40.2
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 7.8e-153 545.4 768 44.4
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 1.1e-151 541.6 892 40.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.5e-151 541.2 894 39.1
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.5e-151 541.2 892 39.8
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.3e-151 540.0 818 43.0
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 4.3e-151 539.7 891 41.1
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 7.3e-151 538.9 657 48.1
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 2.8e-150 537.0 896 42.3
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 6.2e-150 535.8 886 41.8
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.1e-146 525.0 908 40.1
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-146 524.2 882 41.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 1.3e-144 518.1 892 38.6
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 7.3e-143 512.3 898 38.4
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 2.8e-142 510.4 898 38.3
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 8.1e-142 508.8 887 38.9
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.1e-141 508.4 874 39.6
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.8e-141 507.7 874 39.8
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 2.4e-141 507.3 892 40.4
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 8.9e-141 505.4 889 40.4
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.2e-140 505.0 889 40.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 4.4e-140 503.1 896 38.4
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 5.8e-140 502.7 896 38.4
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 3.8e-139 500.0 886 40.3
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 8.4e-139 498.8 891 38.3
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 8.4e-139 498.8 891 38.3
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 4.1e-138 496.5 908 39.8
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 5.4e-138 496.1 888 39.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.2e-137 495.0 895 38.1
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 5.6e-135 486.1 895 39.4
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.8e-134 483.8 895 38.4
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 4.7e-134 483.0 892 39.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 7.6e-132 475.7 890 40.8
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 8.4e-131 472.2 889 40.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 6.2e-126 456.1 668 44.6
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 2.9e-123 447.2 893 38.7
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 1.3e-112 411.8 779 37.9
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 7.4e-111 406.0 857 37.3
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 1.8e-109 401.4 670 43.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.1e-109 400.6 755 40.4
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 3.4e-100 370.5 892 33.4
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.2e-98 362.8 643 40.6
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 8.2e-94 349.4 928 33.0
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.1e-93 347.1 504 42.9
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 3.4e-92 344.0 611 36.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.7e-89 334.3 470 48.1
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 3.9e-88 330.5 854 31.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 7.4e-87 326.2 605 40.8
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 6.3e-86 323.2 898 31.7
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 5.0e-83 313.5 356 52.0
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.1e-82 312.4 477 45.9
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.6e-81 308.5 348 48.6
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.7e-75 288.5 379 49.3
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 1.2e-71 275.8 925 28.4
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 5.9e-68 263.5 977 27.4
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.1e-65 253.4 395 45.8
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 5.7e-63 246.9 876 27.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.2e-52 212.6 766 27.5
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.3e-51 208.4 252 53.2
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.5e-50 204.9 205 52.2
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 8.3e-46 189.9 318 43.1
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.7e-44 184.9 425 36.0
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.7e-43 182.2 251 48.2
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 7.5e-39 166.8 189 47.6
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 3.9e-35 154.5 364 35.7
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 4.4e-31 141.0 160 54.4
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.9e-30 138.3 840 25.4
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 2.1e-20 105.5 160 45.6
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 1.2e-12 79.7 130 45.4
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-12 79.3 205 35.1
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 3.3e-10 71.6 120 40.0
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.6e-09 69.3 215 26.5
RcHm_v2.0_Chr1g0379811 Rosa chinensis HOM05D000121 ORTHO05D013415 2.4e-08 65.5 37 81.1
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 2.6e-07 62.0 360 24.7
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 7.6e-07 60.5 175 34.9


User provided reference genes

Program Settings