Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 2371.3 1255 100.0
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 2066.6 1262 88.4
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2056.2 1262 87.9
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2055.4 1262 88.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1942.9 1302 82.3
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1893.6 1303 80.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1632.5 1267 70.2
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1506.1 1178 71.3
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1349.0 1344 58.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1299.3 1263 60.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1250.3 1271 55.5
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1248.8 1131 60.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1226.5 1293 54.7
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1223.8 1316 53.3
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1217.6 1280 54.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1198.7 1280 53.4
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1193.3 1307 52.7
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1189.9 1305 54.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1188.7 1299 53.1
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1179.5 1273 53.8
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1179.5 1282 54.6
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1178.7 963 64.4
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1175.2 1279 53.5
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1174.8 1292 53.0
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1172.1 1327 53.4
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1171.0 1278 54.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1168.3 1180 55.3
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1167.9 1266 53.7
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1158.3 1301 52.0
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1283 52.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1155.6 1273 53.0
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1154.0 1322 51.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1153.3 1279 54.3
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1149.4 1264 53.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1145.2 1176 55.1
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 1134.0 1124 57.9
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1133.2 1265 54.5
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1127.1 1308 52.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1124.0 1143 55.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1120.5 1265 51.9
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1116.3 1153 57.2
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1110.1 1300 52.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1106.3 1275 51.1
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1105.9 1272 51.1
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1105.5 1452 46.6
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1104.7 1265 53.2
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1085.9 1327 48.9
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1293 50.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 2.2e-310 1069.3 1291 49.3
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 6.1e-308 1061.2 1100 54.2
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 4.4e-306 1055.0 1489 47.7
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.3e-305 1053.5 1305 49.3
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.1e-304 1050.4 1356 47.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 2.6e-303 1045.8 1095 53.8
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.9e-301 1039.6 1263 49.2
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.5e-301 1038.1 1150 52.3
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.8e-299 1033.1 1149 52.7
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1326 46.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 3.0e-299 1032.3 1272 49.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 6.7e-299 1031.2 1292 48.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.5e-298 1030.0 1263 50.0
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 2.8e-297 1025.8 1267 48.9
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.0e-295 1019.6 1266 48.4
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 4.5e-295 1018.5 1262 49.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 5.5e-293 1011.5 1176 49.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 9.4e-293 1010.7 1262 48.0
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.6e-292 1010.0 1308 46.2
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.7e-292 1008.4 1186 51.9
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.0e-291 1007.3 1094 52.8
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 5.2e-291 1005.0 1014 56.3
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 8.8e-291 1004.2 1077 53.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 8.8e-291 1004.2 1336 46.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.2e-290 1003.8 1263 49.0
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 2.0e-290 1003.0 1265 48.8
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 5.7e-290 1001.5 1265 48.6
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 2.8e-289 999.2 1267 49.0
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 3.7e-289 998.8 1264 48.8
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 3.7e-289 998.8 1264 48.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.7e-289 998.8 950 57.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 7.0e-288 994.6 1284 47.8
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.1e-285 987.3 1317 46.5
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 3.6e-284 982.2 1343 45.1
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.4e-282 975.7 1283 47.8
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.1e-280 969.1 980 55.9
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 8.6e-278 961.1 946 56.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.5e-277 959.5 1125 49.5
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.4e-272 943.7 1169 51.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.9e-271 938.3 1323 43.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 4.0e-267 925.6 1166 48.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.6e-263 912.1 1116 48.7
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-262 910.2 1009 52.9
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.0e-254 884.4 1326 43.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.2e-250 870.9 1277 43.8
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 9.2e-248 861.3 1325 42.6
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.2e-241 840.1 1340 41.7
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.9e-241 839.7 1160 44.1
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.9e-232 810.4 1265 41.3
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.1e-223 780.4 1262 39.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 9.3e-216 755.0 1067 45.3
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 9.6e-213 745.0 552 68.1
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 7.6e-210 735.3 970 45.6
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 9.0e-203 711.8 514 70.4
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 4.5e-202 709.5 1277 39.9
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.1e-197 694.9 946 45.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.8e-188 662.9 525 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.2e-169 600.9 980 39.2
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.1e-160 572.0 1170 34.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.5e-152 544.3 1195 32.4
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.7e-138 497.7 685 43.9
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.8e-110 405.2 251 85.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.0e-109 401.7 947 30.3
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.6e-98 364.0 703 36.8
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.8e-84 317.8 178 90.4
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 3.2e-83 314.7 280 60.4
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 7.0e-54 217.2 177 61.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-49 202.6 236 45.8
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.0e-44 186.8 139 70.5
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 5.2e-41 174.5 582 28.0
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.2e-30 137.1 105 61.0
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.7e-28 132.9 97 68.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.6e-28 131.0 124 55.6
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 7.3e-27 127.5 239 34.3
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 7.3e-27 127.5 84 69.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.2e-25 121.3 105 60.0
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 4.4e-24 118.2 138 50.0
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-23 116.3 120 57.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-22 113.6 125 56.0
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 4.3e-19 101.7 145 44.8
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.1e-18 99.4 71 66.2
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.1e-17 97.1 89 55.1
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-17 96.7 113 48.7
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 7.6e-16 90.9 78 59.0
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 8.4e-15 87.4 382 27.7
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 2.1e-10 72.8 96 46.9
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.1e-10 72.8 94 42.6
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.5e-08 66.6 54 63.0
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 9.9e-08 63.9 113 38.9
QL09p011945 Quercus lobata HOM05D005400 ORTHO05D043781 1.3e-07 63.5 124 37.9
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 4.9e-07 61.6 86 37.2
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 9.3e-06 57.4 53 52.8


User provided reference genes

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