Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-161 572.4 297 100.0
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.2e-139 499.2 297 88.9
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 5.4e-138 494.6 297 88.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.4e-138 494.6 297 88.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.0e-137 492.7 297 87.9
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.0e-136 490.3 297 87.2
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.3e-135 484.2 329 80.5
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.0e-113 411.4 293 76.5
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.1e-106 390.6 296 71.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-101 374.0 217 88.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 4.9e-91 338.6 305 61.0
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.4e-90 337.0 305 59.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-87 326.2 166 98.2
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 6.2e-86 321.6 299 61.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.8e-85 320.1 297 60.6
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.4e-85 319.7 296 56.4
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.2e-84 317.4 295 60.0
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 5.8e-84 315.1 312 55.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.8e-83 312.4 300 59.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 6.7e-80 301.6 292 58.2
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 5.6e-79 298.5 289 57.1
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-78 297.4 300 56.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.8e-78 295.4 303 54.8
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.8e-78 295.4 295 57.3
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.4e-77 293.9 306 53.3
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.5e-76 290.4 284 57.4
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.0e-76 290.0 293 55.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.5e-76 288.9 297 56.2
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.9e-75 286.2 295 53.6
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.9e-75 285.4 298 53.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.4e-74 283.9 293 53.9
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.2e-74 282.7 303 52.8
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.2e-74 282.3 300 52.3
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 5.5e-74 282.0 315 52.4
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.1e-73 280.0 266 57.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 4.6e-73 278.9 312 51.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 6.0e-73 278.5 291 55.0
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 7.9e-73 278.1 304 50.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 7.9e-73 278.1 292 55.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.3e-72 277.3 298 50.7
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.1e-71 274.2 298 50.0
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.5e-71 273.1 255 57.6
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 8.2e-70 268.1 264 57.2
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.4e-69 266.5 328 50.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.4e-69 266.5 293 54.3
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.4e-69 266.5 291 53.6
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.3e-69 265.4 298 50.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 6.9e-69 265.0 297 51.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 9.0e-69 264.6 295 51.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.4e-68 262.7 298 50.7
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 7.7e-68 261.5 293 53.2
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.3e-67 260.8 290 53.1
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.0e-67 258.8 286 51.7
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 6.5e-67 258.5 288 52.4
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 8.5e-67 258.1 295 49.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.4e-66 254.6 294 49.0
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.6e-65 252.7 261 54.4
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.1e-65 251.9 260 54.2
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.9e-65 251.5 309 49.2
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.8e-64 250.4 268 51.5
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.0e-63 246.9 282 49.3
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-63 246.9 229 62.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.5e-63 246.5 285 47.7
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 5.7e-63 245.4 292 47.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 6.3e-62 241.9 294 47.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.1e-61 241.1 296 48.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.4e-61 240.7 290 46.6
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.8e-61 240.4 294 46.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.0e-59 234.6 254 50.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.9e-58 230.3 251 49.0
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 5.5e-58 228.8 252 49.2
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.2e-57 227.6 213 57.7
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.3e-56 223.4 294 44.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.9e-56 222.6 252 48.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 3.9e-56 222.6 296 44.6
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.1e-56 222.2 211 56.9
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 3.7e-54 216.1 288 42.7
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 6.3e-54 215.3 184 62.5
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 5.3e-53 212.2 290 41.0
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.2e-52 211.1 267 46.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.2e-52 211.1 282 44.7
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.7e-51 207.2 240 50.8
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 8.5e-51 204.9 283 42.8
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.1e-50 204.5 283 42.8
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 8.8e-48 194.9 282 40.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 3.3e-47 193.0 289 41.2
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 9.7e-47 191.4 341 38.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.3e-46 191.0 218 53.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.1e-45 186.4 267 43.4
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.0e-43 181.4 198 53.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.9e-43 179.9 198 52.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 6.5e-43 178.7 210 47.1
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.7e-41 173.3 234 47.9
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.7e-41 173.3 197 45.2
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 4.7e-41 172.6 235 43.4
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.8e-38 163.3 193 46.1
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 5.3e-37 159.1 252 38.5
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.5e-34 151.0 300 34.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-33 147.5 245 40.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-33 147.5 223 41.3
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.6e-33 146.4 199 43.7
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.8e-32 142.1 157 47.8
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.4e-31 139.4 285 34.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.8e-30 136.7 136 50.0
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.8e-30 136.7 92 72.8
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.7e-28 128.6 201 40.8
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.0e-27 128.3 200 41.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.1e-26 124.8 108 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.9e-26 124.0 261 32.2
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.3e-26 123.2 114 57.0
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.6e-25 120.9 341 28.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 5.2e-24 115.9 109 54.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-23 114.8 121 53.7
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-22 111.3 54 92.6
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.7e-22 110.9 73 78.1
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.2e-22 110.5 181 36.5
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 2.8e-22 110.2 62 88.7
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 8.3e-22 108.6 62 87.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-19 101.3 80 66.2
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-19 101.3 80 66.2
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.9e-19 99.8 240 31.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.6e-18 95.9 62 75.8
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.8e-16 90.9 101 48.5
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-14 84.7 61 65.6
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.7e-14 83.2 118 40.7
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 2.7e-12 77.0 122 36.1
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 8.0e-09 65.5 187 29.4
Lsat_1_v5_gn_8_10160 Lactuca sativa HOM05D006306 ORTHO05D007912 2.2e-06 57.4 275 22.9


User provided reference genes

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