Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 9.7e-121 436.8 217 100.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-102 375.9 217 88.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-86 323.6 231 75.3
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-86 323.6 217 79.3
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 5.6e-84 314.7 217 77.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.6e-84 314.7 217 77.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.3e-84 314.3 217 77.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-83 313.5 217 77.4
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.0e-62 241.5 213 63.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.4e-58 230.3 216 60.2
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 9.9e-49 197.6 225 50.7
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.9e-48 196.1 225 48.9
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.3e-45 187.2 226 52.2
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.0e-45 186.0 90 96.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 6.7e-45 184.9 232 45.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.3e-43 180.6 215 48.8
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.8e-42 176.8 216 49.5
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.4e-42 176.4 216 44.4
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.1e-42 176.0 218 50.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 5.5e-39 165.2 213 46.5
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 5.5e-39 165.2 225 43.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 9.3e-39 164.5 209 46.4
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.5e-38 162.5 213 46.0
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.0e-37 161.0 219 44.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 3.9e-37 159.1 215 44.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 6.7e-37 158.3 209 44.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 8.7e-37 157.9 217 45.2
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.5e-36 157.1 215 45.6
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.5e-36 157.1 209 47.8
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.9e-36 156.8 204 44.6
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 2.1e-35 153.3 218 41.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.8e-35 152.9 219 41.1
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.7e-35 152.5 222 41.0
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 4.8e-35 152.1 204 46.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.1e-35 151.4 223 42.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.1e-34 151.0 223 39.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.4e-34 150.6 218 41.3
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.4e-34 150.6 220 40.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.4e-34 149.8 215 44.7
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-34 149.8 80 85.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 4.0e-34 149.1 218 41.3
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 5.3e-34 148.7 213 40.8
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 9.0e-34 147.9 215 41.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.5e-33 147.1 232 40.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.4e-33 146.0 207 43.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.0e-32 144.4 234 40.2
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.2e-32 143.3 206 46.1
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 4.9e-32 142.1 205 41.5
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 4.2e-31 139.0 218 38.5
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.6e-30 137.1 214 42.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.7e-30 136.3 233 39.9
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.5e-30 136.0 212 43.4
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.6e-30 135.6 210 41.4
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 4.6e-30 135.6 212 42.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.3e-29 133.3 180 43.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 3.0e-29 132.9 206 37.4
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.0e-29 132.9 212 40.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 5.1e-29 132.1 254 37.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 5.1e-29 132.1 195 39.0
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.1e-28 131.0 175 42.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.5e-28 130.6 221 38.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.5e-28 129.8 214 38.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.3e-27 127.5 220 36.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.3e-27 127.5 185 38.9
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 2.1e-27 126.7 210 37.6
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.7e-27 125.9 188 43.1
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.1e-26 124.4 214 37.9
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.4e-26 123.2 216 36.1
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.4e-26 123.2 213 35.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.3e-26 122.1 189 40.7
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.5e-25 120.6 216 39.4
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.5e-25 120.6 213 33.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.6e-25 119.8 204 36.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 4.5e-25 119.0 193 40.9
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 4.5e-25 119.0 203 37.9
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 7.6e-25 118.2 175 39.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.8e-24 115.9 157 42.7
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 5.0e-24 115.5 212 33.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.5e-24 114.8 216 33.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.1e-23 114.4 203 36.9
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.5e-23 113.2 213 33.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 9.3e-23 111.3 54 92.6
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.2e-22 110.9 175 38.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.7e-22 109.8 203 35.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.3e-21 107.5 166 39.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.1e-21 105.5 215 34.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.5e-20 103.2 204 35.3
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.3e-20 102.8 204 35.3
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 3.3e-20 102.8 204 35.3
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.7e-19 99.4 186 33.9
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.4e-18 97.4 110 48.2
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.4e-18 96.7 112 48.2
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 6.9e-18 95.1 204 32.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-17 94.0 180 37.2
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.6e-17 93.2 185 35.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.6e-17 93.2 111 50.5
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.6e-17 93.2 89 50.6
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.5e-17 92.4 102 43.1
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 5.9e-17 92.0 147 38.8
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.2e-16 90.1 178 34.3
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.5e-15 85.5 85 52.9
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 6.7e-13 78.6 129 37.2
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.7e-12 75.5 130 35.4
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 1.7e-11 73.9 140 32.9
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 3.7e-11 72.8 84 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.1e-10 71.2 227 28.2
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.8e-08 62.8 195 29.2
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 5.0e-08 62.4 234 24.8
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 6.5e-08 62.0 43 60.5
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 8.5e-08 61.6 159 31.4
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 1.9e-07 60.5 204 26.5
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.2e-07 59.7 184 25.0
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.4e-07 58.2 44 65.9
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.4e-07 58.2 44 65.9
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 3.6e-06 56.2 97 38.1
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.6e-06 56.2 97 38.1
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.6e-06 56.2 132 27.3


User provided reference genes

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