Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379271 Rosa chinensis HOM05D006849 ORTHO05D003348 3.8e-114 414.8 209 100.0
RcHm_v2.0_Chr1g0378751 Rosa chinensis HOM05D006849 ORTHO05D003348 5.8e-62 241.5 130 99.2
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 8.3e-53 211.1 195 53.8
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 6.2e-48 194.9 197 49.7
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-47 193.0 207 48.8
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-44 183.7 204 43.6
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-44 183.0 190 45.3
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 1.9e-41 173.3 212 44.3
FAN06G4964 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.4e-36 156.4 171 47.4
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.7e-35 152.9 191 44.0
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-34 149.8 199 39.2
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.9e-34 149.1 201 43.3
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 8.7e-34 147.9 200 44.0
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.7e-34 147.9 200 44.0
RcHm_v2.0_Chr2g0135141 Rosa chinensis HOM05D006849 ORTHO05D003348 4.3e-33 145.6 116 53.4
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 1.6e-32 143.7 70 90.0
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-30 136.3 203 42.4
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 3.8e-29 132.5 119 50.4
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 3.2e-28 129.4 187 42.2
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.2e-28 129.4 173 42.2
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.7e-26 121.7 197 39.6
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.5e-25 120.6 141 44.0
RcHm_v2.0_Chr5g0004901 Rosa chinensis HOM05D006849 ORTHO05D003348 4.0e-23 112.5 103 53.4
FAN08G0186 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.5e-22 109.0 166 36.7
FAN26G0218 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.6e-22 108.2 187 35.8
MD17G1262000 Malus domestica HOM05D006849 ORTHO05D003348 1.0e-21 107.8 219 31.5
FAN27G2674 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-21 107.5 167 38.3
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 4.9e-21 105.5 132 41.7
FAN27G1530 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.1e-20 101.7 120 44.2
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 7.1e-20 101.7 201 32.8
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.6e-19 100.5 125 47.2
FAN06G3145 Fragaria x ananassa HOM05D013178 ORTHO05D019138 4.6e-19 99.0 123 47.2
FAN21G3588 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.0e-19 98.6 126 46.8
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-18 97.4 124 46.0
MD08G1229500 Malus domestica HOM05D006849 ORTHO05D003348 1.3e-18 97.4 207 30.9
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.0e-18 96.3 176 31.8
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 3.9e-18 95.9 184 31.5
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.9e-18 95.9 143 36.4
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-17 94.4 184 33.7
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 1.6e-16 90.5 144 39.6
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.7e-16 89.4 162 40.1
FAN14G5332 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.4e-15 86.7 120 45.8
FvH4_3g24350 Fragaria vesca HOM05D006849 ORTHO05D003348 3.1e-15 86.3 133 42.9
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.1e-15 86.3 98 38.8
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.1e-15 86.3 174 30.5
FvH4_3g07130 Fragaria vesca HOM05D006849 ORTHO05D003348 4.0e-15 85.9 136 41.9
FvH4_6g30401 Fragaria vesca HOM05D006849 ORTHO05D003348 4.0e-15 85.9 134 38.8
FAN26G2996 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.0e-15 85.9 143 34.3
FAN24G2869 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.0e-15 84.7 179 35.8
FAN03G1780 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.5e-14 84.0 118 44.1
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 2.0e-14 83.6 199 29.6
FAN09G2827 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-14 83.2 123 39.0
FvH4_6g33630 Fragaria vesca HOM05D006849 ORTHO05D003348 4.5e-14 82.4 136 41.2
FAN20G1145 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-13 80.9 146 34.9
MD14G1125700 Malus domestica HOM05D006849 ORTHO05D003348 1.3e-13 80.9 84 39.3
FAN26G2619 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.7e-13 80.5 84 45.2
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 2.9e-13 79.7 93 47.3
FAN21G0813 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.9e-13 79.7 127 35.4
RcHm_v2.0_Chr5g0028311 Rosa chinensis HOM05D006849 ORTHO05D003348 5.0e-13 79.0 72 48.6
FAN23G1018 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-12 77.8 124 37.9
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.9e-12 77.0 139 30.2
FAN12G1343 Fragaria x ananassa HOM05D007856 ORTHO05D003348 7.1e-12 75.1 196 28.1
FAN08G3609 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-12 74.7 121 37.2
FAN09G4859 Fragaria x ananassa HOM05D007856 ORTHO05D003348 9.3e-12 74.7 176 30.7
FAN15G2956 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-12 74.7 85 45.9
FAN16G1061 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-12 74.7 123 37.4
FAN16G1224 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-12 74.7 85 45.9
FAN16G3375 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.3e-12 74.7 85 45.9
FAN05G3326 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.1e-11 73.6 174 29.9
FvH4_4g18140 Fragaria vesca HOM05D006849 ORTHO05D003348 2.7e-11 73.2 145 37.2
FAN12G0440 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.7e-11 73.2 156 33.3
FAN25G2444 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.6e-11 72.4 132 38.6
FvH4_5g31990 Fragaria vesca HOM05D006849 ORTHO05D003348 6.1e-11 72.0 69 43.5
FAN18G1198 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.1e-11 72.0 69 43.5
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 6.1e-11 72.0 111 29.7
FAN27G2295 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-10 71.2 142 33.1
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.3e-10 70.9 115 31.3
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 2.3e-10 70.1 115 31.3
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 2.3e-10 70.1 115 31.3
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 3.9e-10 69.3 115 30.4
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 6.7e-10 68.6 115 30.4
FAN21G2341 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-09 67.8 176 31.2
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 1.1e-09 67.8 178 27.5
FAN20G2082 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-09 67.0 126 34.9
FAN16G3151 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.5e-09 66.6 90 37.8
FAN05G0189 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.3e-09 66.2 84 38.1
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.3e-09 65.9 204 23.5
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.7e-09 65.5 110 29.1
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 7.4e-09 65.1 183 25.7
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.6e-08 63.9 160 26.2
DCAR_025622 Daucus carota HOM05D012849 ORTHO05D000065 2.8e-08 63.2 145 26.9
FAN24G2379 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.7e-08 62.8 96 32.3
BraA02t05129Z Brassica rapa HOM05D000305 ORTHO05D000065 4.8e-08 62.4 173 26.0
BraA05t20759Z Brassica rapa HOM05D000305 ORTHO05D000065 4.8e-08 62.4 173 26.0
MD02G1249900 Malus domestica HOM05D006849 ORTHO05D003348 1.1e-07 61.2 101 30.7
Potri.006G172600 Populus trichocarpa HOM05D018388 ORTHO05D003348 2.4e-07 60.1 174 24.1
DCAR_010369 Daucus carota HOM05D012849 ORTHO05D000065 6.9e-07 58.5 115 27.8
FvH4_5g29621 Fragaria vesca HOM05D006849 ORTHO05D003348 6.9e-07 58.5 75 33.3
RcHm_v2.0_Chr1g0339991 Rosa chinensis HOM05D048603 ORTHO05D003348 9.0e-07 58.2 45 51.1
AUR62030467 Chenopodium quinoa HOM05D008127 ORTHO05D010494 1.2e-06 57.8 83 28.9
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 1.2e-06 57.8 180 26.1
FAN10G1627 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-06 57.0 64 42.2
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.6e-06 56.6 175 25.1
FAN15G0345 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-06 56.6 120 35.8
MD05G1215800 Malus domestica HOM05D006849 ORTHO05D003348 5.9e-06 55.5 121 28.1


User provided reference genes

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