Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379231 Rosa chinensis HOM05D007222 ORTHO05D010132 0.0e+00 1101.7 651 100.0
RcHm_v2.0_Chr1g0379381 Rosa chinensis HOM05D007222 ORTHO05D010132 0.0e+00 1101.7 651 100.0
RcHm_v2.0_Chr1g0378721 Rosa chinensis HOM05D007222 ORTHO05D010132 0.0e+00 1095.1 651 98.6
RcHm_v2.0_Chr1g0379031 Rosa chinensis HOM05D007222 ORTHO05D010132 2.6e-246 855.5 420 97.9
RcHm_v2.0_Chr1g0379111 Rosa chinensis HOM05D007222 ORTHO05D010132 1.3e-176 624.0 432 70.4
FvH4_7g27710 Fragaria vesca HOM05D007222 ORTHO05D010132 1.6e-78 298.1 393 44.5
FAN03G1025 Fragaria x ananassa HOM05D007222 ORTHO05D010132 8.9e-77 292.4 393 44.3
FAN01G2879 Fragaria x ananassa HOM05D000202 ORTHO05D010132 2.9e-75 287.3 395 44.3
FvH4_7g27660 Fragaria vesca HOM05D007222 ORTHO05D010132 3.7e-75 287.0 393 43.5
FAN06G0677 Fragaria x ananassa HOM05D007222 ORTHO05D010132 8.3e-75 285.8 395 44.1
FvH4_7g27720 Fragaria vesca HOM05D007222 ORTHO05D010132 3.2e-74 283.9 396 44.4
FvH4_7g13450 Fragaria vesca HOM05D007222 ORTHO05D010132 4.6e-73 280.0 423 42.6
FAN06G0811 Fragaria x ananassa HOM05D007222 ORTHO05D010132 4.6e-73 280.0 395 43.8
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 5.0e-72 276.6 420 41.4
FvH4_7g27670 Fragaria vesca HOM05D007222 ORTHO05D010132 8.6e-72 275.8 419 41.1
FAN06G2815 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.5e-71 275.0 419 40.8
FAN03G0079 Fragaria x ananassa HOM05D001548 ORTHO05D003901 1.9e-71 274.6 382 41.1
FAN06G1439 Fragaria x ananassa HOM05D007222 ORTHO05D010132 3.3e-71 273.9 419 40.6
FAN06G5048 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.6e-70 271.6 389 41.9
FAN06G2272 Fragaria x ananassa HOM05D007222 ORTHO05D010132 4.4e-68 263.5 391 40.7
FvH4_7g27631 Fragaria vesca HOM05D007222 ORTHO05D010132 9.8e-68 262.3 385 41.0
FAN06G2615 Fragaria x ananassa HOM05D007222 ORTHO05D010132 9.8e-68 262.3 374 41.7
FAN10G0676 Fragaria x ananassa HOM05D007222 ORTHO05D010132 3.2e-66 257.3 385 40.5
FAN03G0896 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.6e-65 255.0 393 41.5
FAN06G2032 Fragaria x ananassa HOM05D007222 ORTHO05D010132 6.0e-65 253.1 395 41.5
FAN06G4891 Fragaria x ananassa HOM05D007222 ORTHO05D010132 6.6e-56 223.0 262 46.6
Prupe.5G179400 Prunus persica HOM05D007222 ORTHO05D010132 1.5e-52 211.8 382 36.6
Prupe.5G196500 Prunus persica HOM05D007222 ORTHO05D010132 2.2e-51 208.0 375 36.8
RcHm_v2.0_Chr7g0179991 Rosa chinensis HOM05D007222 ORTHO05D019190 1.0e-48 199.1 395 35.2
FAN01G0578 Fragaria x ananassa HOM05D007222 ORTHO05D010132 3.9e-48 197.2 340 39.7
Prupe.5G196700 Prunus persica HOM05D007222 ORTHO05D010132 1.1e-47 195.7 411 34.3
FvH4_5g16160 Fragaria vesca HOM05D007222 ORTHO05D019190 3.3e-47 194.1 388 35.6
FAN06G2198 Fragaria x ananassa HOM05D007222 ORTHO05D010132 3.3e-47 194.1 251 44.2
MD06G1179300 Malus domestica HOM05D007222 ORTHO05D010132 4.3e-47 193.7 305 39.7
FAN18G1099 Fragaria x ananassa HOM05D007222 ORTHO05D019190 1.6e-46 191.8 388 35.3
MD06G1179400 Malus domestica HOM05D007222 ORTHO05D010132 1.4e-45 188.7 387 36.4
Prupe.8G014700 Prunus persica HOM05D007222 ORTHO05D010132 1.5e-44 185.3 368 36.4
Prupe.5G196600 Prunus persica HOM05D007222 ORTHO05D010132 7.6e-44 183.0 400 34.0
Prupe.5G216900 Prunus persica HOM05D007222 ORTHO05D010132 9.9e-44 182.6 364 36.8
RcHm_v2.0_Chr7g0205711 Rosa chinensis HOM05D007222 ORTHO05D020701 2.4e-42 177.9 372 36.3
MD17G1269500 Malus domestica HOM05D007222 ORTHO05D036617 5.4e-42 176.8 376 34.8
Prupe.5G196800 Prunus persica HOM05D007222 ORTHO05D010132 1.6e-41 175.3 275 39.6
FAN03G1782 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.0e-40 172.6 366 33.3
MD06G1178900 Malus domestica HOM05D007222 ORTHO05D010132 2.8e-38 164.5 248 41.5
FAN03G0246 Fragaria x ananassa HOM05D007222 ORTHO05D010132 3.6e-38 164.1 184 47.3
FAN01G0286 Fragaria x ananassa HOM05D007222 ORTHO05D010132 6.2e-38 163.3 360 34.2
Prupe.3G199800 Prunus persica HOM05D007222 ORTHO05D010132 7.6e-36 156.4 310 36.5
FAN10G3128 Fragaria x ananassa HOM05D007222 ORTHO05D010132 9.9e-36 156.0 162 50.0
FAN13G2764 Fragaria x ananassa HOM05D007222 ORTHO05D029649 2.2e-35 154.8 319 36.1
FAN18G1465 Fragaria x ananassa HOM05D007222 ORTHO05D035251 2.9e-35 154.5 411 31.4
Prupe.7G215500 Prunus persica HOM05D007222 ORTHO05D010132 3.8e-35 154.1 270 36.3
FvH4_5g02900 Fragaria vesca HOM05D007222 ORTHO05D029649 1.4e-34 152.1 384 32.8
FAN18G1328 Fragaria x ananassa HOM05D007222 ORTHO05D029649 3.2e-34 151.0 386 33.2
Prupe.3G199700 Prunus persica HOM05D007222 ORTHO05D010132 4.2e-34 150.6 387 33.3
Prupe.I003600 Prunus persica HOM05D007222 ORTHO05D010132 5.4e-34 150.2 321 34.6
Prupe.5G190300 Prunus persica HOM05D007222 ORTHO05D010132 3.0e-32 144.4 324 34.3
Prupe.3G220200 Prunus persica HOM05D007222 ORTHO05D036617 5.1e-32 143.7 372 30.9
Prupe.3G221000 Prunus persica HOM05D007222 ORTHO05D036617 5.1e-32 143.7 377 30.5
Prupe.5G196400 Prunus persica HOM05D007222 ORTHO05D010132 6.7e-32 143.3 250 38.4
Prupe.5G190500 Prunus persica HOM05D007222 ORTHO05D010132 1.9e-31 141.7 322 32.0
Prupe.5G190600 Prunus persica HOM05D007222 ORTHO05D010132 5.6e-31 140.2 322 32.3
Prupe.2G232100 Prunus persica HOM05D007222 ORTHO05D010132 1.1e-29 136.0 268 33.6
Prupe.7G215400 Prunus persica HOM05D007222 ORTHO05D010132 4.0e-29 134.0 314 34.1
FAN08G3302 Fragaria x ananassa HOM05D007222 ORTHO05D020701 9.0e-29 132.9 406 29.8
FvH4_7g27640 Fragaria vesca HOM05D007222 ORTHO05D010132 8.4e-27 126.3 150 48.0
FAN06G2293 Fragaria x ananassa HOM05D007222 ORTHO05D010132 5.5e-26 123.6 318 28.9
FAN19G1742 Fragaria x ananassa HOM05D007222 ORTHO05D020701 4.6e-25 120.6 370 28.6
RcHm_v2.0_Chr1g0379041 Rosa chinensis HOM05D007222 ORTHO05D341950 7.9e-25 119.8 140 100.0
FAN06G1181 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.8e-24 118.6 256 32.8
RcHm_v2.0_Chr2g0100421 Rosa chinensis HOM05D013290 ORTHO05D016295 1.8e-24 118.6 381 28.3
RcHm_v2.0_Chr4g0388551 Rosa chinensis HOM05D007222 ORTHO05D010132 2.8e-22 111.3 381 28.1
FvH4_5g02920 Fragaria vesca HOM05D007222 ORTHO05D046396 6.2e-22 110.2 332 30.1
FAN10G0066 Fragaria x ananassa HOM05D007222 ORTHO05D010132 6.2e-22 110.2 108 50.9
FAN18G3407 Fragaria x ananassa HOM05D007222 ORTHO05D046396 6.2e-22 110.2 404 28.2
RcHm_v2.0_Chr7g0219841 Rosa chinensis HOM05D007222 ORTHO05D020701 8.2e-22 109.8 375 29.3
FAN08G2897 Fragaria x ananassa HOM05D007222 ORTHO05D029649 2.6e-20 104.8 315 29.8
FAN26G2054 Fragaria x ananassa HOM05D013290 ORTHO05D016295 2.9e-19 101.3 366 27.6
FvH4_1g11671 Fragaria vesca HOM05D013290 ORTHO05D016295 4.9e-19 100.5 309 29.1
FvH4_1g23410 Fragaria vesca HOM05D013290 ORTHO05D016295 8.4e-19 99.8 374 27.8
FAN18G3680 Fragaria x ananassa HOM05D007222 ORTHO05D020701 8.4e-19 99.8 252 31.3
FAN26G0118 Fragaria x ananassa HOM05D013290 ORTHO05D016295 1.4e-18 99.0 309 30.1
FAN19G0139 Fragaria x ananassa HOM05D013290 ORTHO05D016295 1.9e-18 98.6 307 29.0
FAN19G1864 Fragaria x ananassa HOM05D013290 ORTHO05D016295 1.9e-18 98.6 363 27.5
FAN26G0503 Fragaria x ananassa HOM05D013290 ORTHO05D016295 9.3e-18 96.3 279 30.1
FvH4_5g15971 Fragaria vesca HOM05D007222 ORTHO05D035251 1.6e-17 95.5 337 29.7
FAN06G3913 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.3e-16 92.4 261 31.0
Prupe.5G149900 Prunus persica HOM05D007222 ORTHO05D010132 1.8e-16 92.0 152 38.2
RcHm_v2.0_Chr7g0180241 Rosa chinensis HOM05D000007 ORTHO05D019190 5.1e-16 90.5 180 32.2
FAN03G1041 Fragaria x ananassa HOM05D007222 ORTHO05D010132 8.7e-16 89.7 106 45.3
FvH4_5g25390 Fragaria vesca HOM05D007222 ORTHO05D020701 1.1e-15 89.4 155 37.4
MD06G1078700 Malus domestica HOM05D007222 ORTHO05D010132 2.2e-14 85.1 179 34.6
FvH4_5g15972 Fragaria vesca HOM05D007222 ORTHO05D035251 2.8e-14 84.7 206 29.1
FAN06G0895 Fragaria x ananassa HOM05D007222 ORTHO05D046523 1.4e-13 82.4 210 33.8
FAN06G1334 Fragaria x ananassa HOM05D007222 ORTHO05D010132 4.1e-13 80.9 165 33.9
FAN06G3778 Fragaria x ananassa HOM05D007222 ORTHO05D010132 4.1e-13 80.9 167 35.3
FAN06G1627 Fragaria x ananassa HOM05D007222 ORTHO05D010132 2.9e-11 74.7 79 41.8
Prupe.5G190200 Prunus persica HOM05D007222 ORTHO05D010132 3.8e-11 74.3 108 38.9
Dinv14371 Davidia involucrata HOM05D039675 ORTHO05D029226 1.4e-10 72.4 330 26.7
Prupe.5G121900 Prunus persica HOM05D007222 ORTHO05D010132 1.4e-10 72.4 195 31.3
FvH4_1g11560 Fragaria vesca HOM05D013290 ORTHO05D016295 1.9e-10 72.0 299 26.4
MD01G1106600 Malus domestica HOM05D007222 ORTHO05D010132 2.5e-10 71.6 126 36.5
MD14G1191600 Malus domestica HOM05D007222 ORTHO05D048640 2.1e-09 68.6 166 33.7
MD16G1080700 Malus domestica HOM05D007222 ORTHO05D010132 2.1e-09 68.6 88 43.2
MD14G1191500 Malus domestica HOM05D007222 ORTHO05D048640 3.6e-09 67.8 151 34.4
FAN01G2703 Fragaria x ananassa HOM05D007222 ORTHO05D010132 5.1e-08 63.9 146 32.2
MD02G1032200 Malus domestica HOM05D007222 ORTHO05D010132 4.3e-07 60.8 98 35.7
Dinv24221 Davidia involucrata HOM05D015193 ORTHO05D005682 9.7e-07 59.7 289 25.6
FAN10G0917 Fragaria x ananassa HOM05D007222 ORTHO05D010132 4.8e-06 57.4 72 44.4


User provided reference genes

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