Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.3e-26 121.3 56 100.0
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.2e-24 114.8 54 94.4
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.2e-24 114.8 54 94.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-23 112.5 54 92.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-23 112.5 54 92.6
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-23 112.5 54 92.6
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 4.1e-23 110.5 54 90.7
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.1e-23 110.5 54 90.7
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.1e-23 110.5 54 90.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.1e-23 110.5 54 90.7
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.7e-16 88.6 49 79.6
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.2e-16 88.2 51 72.5
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 6.4e-16 86.7 51 70.6
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 6.4e-16 86.7 54 72.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.9e-15 85.1 51 74.5
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.2e-15 84.3 49 75.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 5.4e-15 83.6 54 68.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 9.2e-15 82.8 49 73.5
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.2e-14 82.4 48 70.8
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.6e-14 82.0 49 71.4
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.7e-14 81.3 51 68.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.7e-14 81.3 53 67.9
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.7e-14 81.3 51 68.6
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.7e-14 81.3 51 66.7
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 6.0e-14 80.1 54 63.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.8e-14 79.7 48 70.8
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.0e-13 79.3 51 60.8
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.7e-13 78.6 48 68.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.7e-13 78.6 51 64.7
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.7e-13 78.6 51 62.7
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.7e-13 78.6 47 63.8
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.0e-13 77.8 54 63.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.0e-13 77.8 54 63.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.1e-12 75.9 49 73.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.5e-12 75.5 51 64.7
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.9e-12 75.1 51 64.7
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.5e-12 74.7 50 64.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 2.5e-12 74.7 51 60.8
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.3e-12 74.3 50 64.0
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.3e-12 73.9 49 65.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.3e-12 73.9 48 64.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 4.3e-12 73.9 51 58.8
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 4.3e-12 73.9 49 61.2
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 5.6e-12 73.6 51 62.7
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 7.3e-12 73.2 46 67.4
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.5e-12 72.8 51 64.7
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 9.5e-12 72.8 51 62.7
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.2e-11 72.4 48 66.7
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.6e-11 72.0 49 65.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.1e-11 71.6 46 69.6
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.8e-11 71.2 51 62.7
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.6e-11 70.9 51 60.8
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 3.6e-11 70.9 51 60.8
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 4.7e-11 70.5 51 60.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 6.2e-11 70.1 51 60.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 8.0e-11 69.7 54 59.3
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 8.0e-11 69.7 54 55.6
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.1e-10 69.3 46 65.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.4e-10 68.9 48 64.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.8e-10 68.6 49 63.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.8e-10 68.6 54 57.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.8e-10 68.6 47 57.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 8.9e-10 66.2 51 56.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 8.9e-10 66.2 49 59.2
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.2e-09 65.9 51 58.8
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.5e-09 65.5 48 60.4
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.0e-09 65.1 48 58.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.0e-09 65.1 48 58.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 3.4e-09 64.3 48 54.2
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.4e-09 63.9 53 56.6
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 4.4e-09 63.9 51 54.9
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 4.4e-09 63.9 51 56.9
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 4.4e-09 63.9 51 56.9
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 5.8e-09 63.5 54 50.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 5.8e-09 63.5 51 54.9
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 9.8e-09 62.8 51 54.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 2.9e-08 61.2 65 46.2
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.9e-08 61.2 46 56.5
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 6.4e-08 60.1 42 64.3
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.4e-07 58.9 46 60.9
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.9e-07 58.5 61 49.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.4e-07 58.2 46 52.2
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.2e-07 57.8 50 50.0
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.4e-07 57.0 46 56.5
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 7.0e-07 56.6 45 51.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.1e-06 55.1 46 58.7
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.7e-06 54.7 49 49.0
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.6e-06 53.9 49 46.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 4.6e-06 53.9 63 47.6
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 6.0e-06 53.5 48 50.0
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 6.0e-06 53.5 49 51.0


User provided reference genes

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