Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-94 349.7 176 100.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.3e-64 249.2 229 62.4
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.3e-58 227.6 229 57.2
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.2e-57 226.9 229 58.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-57 226.9 229 58.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.7e-57 224.9 229 57.6
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-56 223.0 229 57.2
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.4e-55 218.8 261 51.0
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.9e-51 205.3 229 53.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-46 190.3 101 100.0
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.4e-45 186.8 232 49.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.3e-43 179.5 211 47.4
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.1e-40 170.6 165 53.9
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 8.9e-40 167.5 237 42.6
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.3e-38 163.7 239 43.1
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.3e-38 163.7 242 42.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.2e-38 162.9 242 41.7
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.9e-38 161.8 242 40.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 9.2e-37 157.5 243 41.2
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 2.1e-36 156.4 229 42.4
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.7e-36 156.0 217 44.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 6.0e-36 154.8 247 41.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 7.8e-36 154.5 239 40.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.7e-35 153.3 228 42.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.0e-35 152.5 232 40.9
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 3.9e-35 152.1 222 41.4
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.9e-35 152.1 248 40.7
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 6.6e-35 151.4 80 85.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.1e-34 150.6 233 40.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.1e-34 150.6 230 40.9
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.9e-34 149.8 243 38.3
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.9e-34 149.8 243 38.3
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 5.6e-34 148.3 230 40.9
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.2e-33 147.1 239 39.3
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 2.1e-33 146.4 235 40.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.1e-32 142.5 233 39.5
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.2e-31 140.6 238 39.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.0e-31 139.8 236 37.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.6e-31 139.4 233 37.8
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.6e-31 139.4 238 39.1
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 3.4e-31 139.0 218 38.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 3.4e-31 139.0 241 38.2
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.6e-31 137.9 90 77.8
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 9.9e-31 137.5 219 39.7
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 9.9e-31 137.5 254 35.8
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.9e-30 136.0 236 37.3
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 3.8e-30 135.6 239 36.8
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.9e-30 135.2 242 36.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.1e-29 134.0 237 36.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.4e-29 133.7 236 38.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.2e-29 132.5 237 37.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.1e-29 132.1 239 36.0
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 5.4e-29 131.7 89 73.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 7.1e-29 131.3 219 37.0
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 9.2e-29 131.0 171 45.6
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.1e-28 129.8 222 36.5
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.6e-28 128.6 237 35.9
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 6.0e-28 128.3 90 70.0
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 7.8e-28 127.9 90 71.1
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 7.8e-28 127.9 237 35.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.3e-27 127.1 237 36.3
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.3e-27 127.1 91 70.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.7e-27 126.7 229 35.8
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 2.3e-27 126.3 90 72.2
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.0e-27 125.9 90 71.1
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.9e-27 125.6 89 70.8
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.6e-27 124.8 238 33.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.5e-26 123.6 241 34.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.5e-26 123.6 242 34.7
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 3.3e-26 122.5 242 32.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 9.6e-26 120.9 218 34.4
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.6e-26 120.9 236 35.2
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.2e-25 120.6 243 34.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.2e-25 120.6 218 34.4
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.8e-25 119.4 238 34.9
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.6e-25 119.0 236 33.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 6.2e-25 118.2 90 64.4
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.4e-24 117.1 243 34.2
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.4e-24 116.3 90 64.4
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-23 114.0 218 32.1
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.2e-23 114.0 244 32.4
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.4e-23 112.5 86 66.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 4.4e-23 112.1 78 74.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.6e-23 111.3 240 31.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 9.9e-23 110.9 233 33.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.1e-21 107.5 93 59.1
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.4e-21 106.3 90 61.1
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 9.3e-21 104.4 216 34.7
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.7e-20 102.8 90 58.9
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 4.6e-20 102.1 90 56.7
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.3e-19 100.5 90 56.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.3e-19 99.8 205 33.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.1e-18 97.4 89 57.3
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.5e-18 96.3 103 52.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 4.3e-18 95.5 93 53.8
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.8e-17 92.8 238 28.6
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.8e-17 92.8 88 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.1e-16 89.4 125 41.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.1e-16 89.4 212 33.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 5.3e-16 88.6 89 50.6
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-15 87.4 201 31.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.5e-15 87.0 177 32.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 2.0e-15 86.7 89 50.6
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.4e-13 80.5 196 32.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 5.4e-13 78.6 40 92.5
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-12 77.0 177 30.5
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.6e-12 77.0 40 90.0
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 7.9e-12 74.7 204 28.4
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.0e-11 74.3 40 87.5
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.3e-11 73.9 85 45.9
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.0e-11 72.8 178 30.3
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 8.7e-11 71.2 125 37.6
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.3e-09 67.4 87 40.2
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-09 67.4 50 68.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.3e-09 67.4 50 68.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 3.7e-09 65.9 179 25.7
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.2e-09 65.1 39 74.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 6.2e-09 65.1 50 68.0
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.8e-08 63.5 42 66.7
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-07 60.1 54 48.1
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.3e-06 57.4 167 28.7


User provided reference genes

Program Settings