Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378651 Rosa chinensis HOM05D001607 ORTHO05D001893 1.7e-47 192.2 91 100.0
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.2e-29 130.2 84 81.0
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 6.9e-28 127.1 84 77.4
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 6.9e-28 127.1 84 78.6
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 1.5e-27 125.9 84 76.2
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 1.5e-27 125.9 84 77.4
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 2.0e-27 125.6 84 76.2
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 2.0e-27 125.6 84 76.2
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 5.8e-27 124.0 84 76.2
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 1.0e-26 123.2 84 75.0
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 1.7e-26 122.5 84 75.0
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 2.2e-26 122.1 84 75.0
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 2.2e-26 122.1 84 73.8
Ca_05502_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 2.9e-26 121.7 84 73.8
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 2.9e-26 121.7 84 72.6
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 2.9e-26 121.7 84 73.8
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 2.9e-26 121.7 84 72.6
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
CDE08G0131 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 73.8
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 71.4
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 3.8e-26 121.3 84 71.4
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 4.9e-26 120.9 84 72.6
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 4.9e-26 120.9 84 73.8
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 4.9e-26 120.9 84 73.8
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 6.5e-26 120.6 84 72.6
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 6.5e-26 120.6 84 72.6
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 6.5e-26 120.6 84 73.8
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 6.5e-26 120.6 84 73.8
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 6.5e-26 120.6 84 72.6
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 8.4e-26 120.2 84 72.6
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 8.4e-26 120.2 84 72.6
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.1e-25 119.8 84 73.8
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 1.1e-25 119.8 84 72.6
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 1.1e-25 119.8 84 73.8
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.1e-25 119.8 84 73.8
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.4e-25 119.4 84 72.6
Cpa.g.sc107.66 Carica papaya HOM05D001607 ORTHO05D001893 1.4e-25 119.4 84 75.0
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 1.4e-25 119.4 84 73.8
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 1.4e-25 119.4 84 71.4
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 1.9e-25 119.0 84 71.4
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 2.5e-25 118.6 84 73.8
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 3.2e-25 118.2 84 71.4
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 3.2e-25 118.2 84 71.4
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 4.2e-25 117.9 84 71.4
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 4.2e-25 117.9 84 71.4
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 4.2e-25 117.9 84 71.4
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 4.2e-25 117.9 84 73.8
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 4.2e-25 117.9 84 70.2
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 5.5e-25 117.5 84 72.6
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 5.5e-25 117.5 84 71.4
Gohir.D08G110716 Gossypium hirsutum HOM05D001607 ORTHO05D001893 7.1e-25 117.1 84 72.6
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 7.1e-25 117.1 84 72.6
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 7.1e-25 117.1 84 73.8
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 9.3e-25 116.7 84 67.9
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 9.3e-25 116.7 84 72.6
Oeu045396.1 Olea europaea HOM05D001607 ORTHO05D001893 9.3e-25 116.7 84 69.0
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 9.3e-25 116.7 84 73.8
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 9.3e-25 116.7 84 70.2
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.2e-24 116.3 84 70.2
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.2e-24 116.3 84 72.6
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 1.2e-24 116.3 84 70.2
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 1.2e-24 116.3 84 72.6
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 1.2e-24 116.3 84 72.6
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 1.6e-24 115.9 84 71.4
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 1.6e-24 115.9 84 72.6
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 1.6e-24 115.9 84 70.2
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.1e-24 115.5 84 72.6
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.1e-24 115.5 84 72.6
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 2.1e-24 115.5 84 72.6
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 2.7e-24 115.2 78 74.4
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 2.7e-24 115.2 84 70.2
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 3.5e-24 114.8 84 70.2
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 3.5e-24 114.8 84 72.6
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 4.6e-24 114.4 84 72.6
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 4.6e-24 114.4 84 70.2
Solyc03g025610.3 Solanum lycopersicum HOM05D001607 ORTHO05D001893 4.6e-24 114.4 84 70.2
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 4.6e-24 114.4 84 70.2
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 4.6e-24 114.4 84 67.9
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 71.4
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 71.4
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 71.4
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 71.4
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 71.4
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 70.2
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 70.2
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 6.0e-24 114.0 84 65.5
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 7.9e-24 113.6 84 67.9
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 1.0e-23 113.2 84 70.2
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 1.0e-23 113.2 84 65.5
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 1.3e-23 112.8 84 70.2
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 1.3e-23 112.8 84 70.2
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 1.3e-23 112.8 84 67.9
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 1.8e-23 112.5 78 73.1
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 1.8e-23 112.5 84 70.2
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 1.8e-23 112.5 84 70.2
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 1.8e-23 112.5 84 70.2
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 1.8e-23 112.5 84 70.2
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 1.8e-23 112.5 83 67.5
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 1.8e-23 112.5 84 69.0
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 3.0e-23 111.7 84 70.2
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 3.0e-23 111.7 84 66.7
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 3.0e-23 111.7 84 69.0
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 5.1e-23 110.9 84 69.0
BcaNung04146 Brassica carinata HOM05D001607 ORTHO05D001893 5.1e-23 110.9 84 69.0
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 5.1e-23 110.9 84 69.0
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 5.1e-23 110.9 84 69.0
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 5.1e-23 110.9 84 66.7
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 8.7e-23 110.2 82 69.5
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.5e-22 109.4 84 69.0
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 3.3e-22 108.2 84 65.5
Peaxi162Scf00444g00720 Petunia axillaris HOM05D001607 ORTHO05D001893 3.3e-22 108.2 83 67.5
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 5.7e-22 107.5 84 65.5
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 2.8e-21 105.1 84 63.1
Glyma.10G109100 Glycine max HOM05D001607 ORTHO05D001893 3.7e-21 104.8 79 67.1
SEGI_31249 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 6.3e-21 104.0 84 61.9
SHI19793 Sapria himalayana HOM05D001607 ORTHO05D001893 1.1e-20 103.2 83 66.3
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 1.4e-20 102.8 84 60.7
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 3.1e-20 101.7 84 65.5
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.5e-19 99.4 78 67.9
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 2.6e-19 98.6 84 60.7
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 3.4e-19 98.2 78 66.7
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 6.5e-18 94.0 84 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 1.1e-17 93.2 84 57.1
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.1e-17 93.2 84 53.6
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 1.9e-17 92.4 84 56.0
arahy.Tifrunner.gnm1.ann1.HT839T Arachis hypogaea HOM05D001607 ORTHO05D001893 2.1e-16 89.0 71 66.2
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 4.6e-16 87.8 85 54.1
Cre16.g675350 Chlamydomonas reinhardtii HOM05D001607 ORTHO05D001893 1.0e-15 86.7 84 51.2
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 2.5e-14 82.0 48 81.2
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 8.2e-13 77.0 85 49.4
CSS0006239 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.4e-12 76.3 85 54.1
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 5.3e-12 74.3 48 70.8
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 2.2e-10 68.9 84 52.4
Actinidia27741 Actinidia chinensis HOM05D001607 ORTHO05D001893 2.0e-06 55.8 30 80.0
Actinidia28326 Actinidia chinensis HOM05D001607 ORTHO05D001893 2.0e-06 55.8 30 80.0


User provided reference genes

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