Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378641 Rosa chinensis HOM05D001607 ORTHO05D001893 1.6e-123 446.0 212 100.0
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 6.5e-61 238.0 168 72.6
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.4e-61 237.7 168 72.0
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 8.4e-61 237.7 168 72.0
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 1.9e-60 236.5 168 72.0
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.9e-60 236.5 168 72.0
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.5e-60 236.1 168 71.4
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.6e-59 233.4 168 71.4
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.7e-59 232.6 168 71.4
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 1.1e-57 227.3 168 67.9
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 4.8e-56 221.9 168 66.1
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 1.4e-55 220.3 168 64.9
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 4.1e-55 218.8 168 64.9
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 6.9e-55 218.0 168 64.3
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 1.2e-54 217.2 168 65.5
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 3.4e-54 215.7 168 63.7
BcaNung04146 Brassica carinata HOM05D001607 ORTHO05D001893 4.5e-54 215.3 181 59.1
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 4.5e-54 215.3 168 62.5
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 4.5e-54 215.3 168 64.3
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 5.9e-54 214.9 167 62.9
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 1.0e-53 214.2 167 62.9
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 1.7e-53 213.4 168 62.5
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.7e-53 213.4 168 63.7
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.7e-53 213.4 168 64.9
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 2.2e-53 213.0 168 61.9
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 2.9e-53 212.6 167 62.3
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 2.9e-53 212.6 168 61.9
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 3.8e-53 212.2 168 61.9
Actinidia27741 Actinidia chinensis HOM05D001607 ORTHO05D001893 5.0e-53 211.8 168 62.5
Actinidia28326 Actinidia chinensis HOM05D001607 ORTHO05D001893 5.0e-53 211.8 168 62.5
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 5.0e-53 211.8 168 62.5
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 5.0e-53 211.8 167 61.7
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 5.0e-53 211.8 167 61.7
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 6.5e-53 211.5 168 61.3
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 8.5e-53 211.1 168 61.9
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 8.5e-53 211.1 168 63.1
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 1.1e-52 210.7 168 61.9
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 1.1e-52 210.7 168 62.5
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 1.1e-52 210.7 168 63.7
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.4e-52 210.3 168 61.9
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 1.4e-52 210.3 167 61.7
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 1.4e-52 210.3 167 61.7
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.4e-52 210.3 168 63.1
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 1.9e-52 209.9 168 61.3
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 2.5e-52 209.5 168 63.1
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.5e-52 209.5 168 61.9
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 2.5e-52 209.5 168 61.3
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 3.2e-52 209.1 168 61.3
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 3.2e-52 209.1 168 63.1
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.2e-52 208.8 168 61.9
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.2e-52 208.8 168 61.9
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 4.2e-52 208.8 168 61.9
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 4.2e-52 208.8 168 63.1
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 4.2e-52 208.8 168 60.7
Oeu045396.1 Olea europaea HOM05D001607 ORTHO05D001893 5.5e-52 208.4 168 60.7
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 7.2e-52 208.0 167 61.1
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 7.2e-52 208.0 168 61.3
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 9.4e-52 207.6 168 60.7
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 9.4e-52 207.6 168 63.7
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 1.2e-51 207.2 168 59.5
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 1.2e-51 207.2 168 61.9
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 2.1e-51 206.5 168 59.5
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 2.1e-51 206.5 168 62.5
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 2.1e-51 206.5 181 58.0
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 3.6e-51 205.7 168 62.5
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 4.6e-51 205.3 168 60.7
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 4.6e-51 205.3 168 61.3
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 4.6e-51 205.3 168 61.3
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 4.6e-51 205.3 168 60.7
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 6.1e-51 204.9 168 60.1
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 6.1e-51 204.9 168 61.3
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 6.1e-51 204.9 172 60.5
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 7.9e-51 204.5 168 59.5
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 7.9e-51 204.5 168 60.1
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 1.0e-50 204.1 168 60.1
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 1.0e-50 204.1 168 58.9
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 1.4e-50 203.8 168 61.9
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 1.8e-50 203.4 168 61.3
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 1.8e-50 203.4 168 60.1
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 1.8e-50 203.4 168 61.3
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 1.8e-50 203.4 168 60.1
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 2.3e-50 203.0 168 60.1
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 2.3e-50 203.0 168 59.5
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 3.0e-50 202.6 168 59.5
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 3.9e-50 202.2 168 58.9
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 3.9e-50 202.2 168 59.5
Hund04758 Selenicereus undatus HOM05D001607 ORTHO05D001893 5.1e-50 201.8 168 58.3
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 5.1e-50 201.8 168 58.9
Peaxi162Scf00444g00720 Petunia axillaris HOM05D001607 ORTHO05D001893 8.8e-50 201.1 168 59.5
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 1.5e-49 200.3 169 59.8
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 2.0e-49 199.9 168 58.9
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 2.0e-49 199.9 168 58.3
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.0e-49 199.9 168 60.1
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 2.0e-49 199.9 168 59.5
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 2.0e-49 199.9 181 55.2
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.5e-49 199.5 168 59.5
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 3.3e-49 199.1 168 59.5
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 4.3e-49 198.7 169 59.8
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 5.7e-49 198.4 168 57.1
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 5.7e-49 198.4 168 58.9
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 5.7e-49 198.4 167 58.7
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 5.7e-49 198.4 168 57.1
Solyc03g025610.3 Solanum lycopersicum HOM05D001607 ORTHO05D001893 5.7e-49 198.4 168 59.5
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 7.4e-49 198.0 165 59.4
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 2.2e-48 196.4 168 57.1
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 2.8e-48 196.1 168 58.9
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 3.7e-48 195.7 168 56.0
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 4.8e-48 195.3 165 58.2
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 4.8e-48 195.3 168 56.5
Sopen03g004440 Solanum pennellii HOM05D001607 ORTHO05D001893 4.8e-48 195.3 168 58.9
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 4.8e-48 195.3 168 57.7
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 6.3e-48 194.9 168 59.5
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 1.1e-47 194.1 168 56.5
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 4.1e-47 192.2 168 57.1
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 6.9e-47 191.4 168 55.4
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 2.6e-46 189.5 169 56.8
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 4.5e-46 188.7 168 58.3
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.0e-45 187.6 155 62.6
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 1.0e-45 187.6 168 54.2
SEGI_31249 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 1.7e-45 186.8 181 52.5
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 1.4e-44 183.7 205 48.3
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 2.5e-44 183.0 161 57.8
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 2.5e-44 183.0 168 54.8
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 7.2e-44 181.4 168 53.6
Cpa.g.sc107.66 Carica papaya HOM05D001607 ORTHO05D001893 2.1e-43 179.9 127 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 4.7e-43 178.7 168 53.6
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 3.9e-42 175.6 173 49.7
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 1.1e-41 174.1 168 51.2
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.1e-41 174.1 168 52.4
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 1.1e-41 174.1 168 51.2
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 1.4e-39 167.2 125 62.4
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 1.0e-37 161.0 173 46.8
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 1.1e-36 157.5 169 49.1
CDE08G0131 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 6.1e-27 125.2 153 44.4
Cre16.g675350 Chlamydomonas reinhardtii HOM05D001607 ORTHO05D001893 2.3e-26 123.2 162 44.4
CAN.G307.25 Capsicum annuum HOM05D001607 ORTHO05D001893 3.7e-24 115.9 72 68.1
Gohir.D08G110724 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.1e-23 112.5 70 70.0
Glyma.09G137350 Glycine max HOM05D001607 ORTHO05D001893 2.1e-19 100.1 87 58.6
PRCOL_00005219 Prasinoderma coloniale HOM05D001607 ORTHO05D001893 6.1e-19 98.6 161 38.5
arahy.Tifrunner.gnm1.ann1.5UA5U0 Arachis hypogaea HOM05D001607 ORTHO05D001893 1.2e-17 94.4 56 71.4
Ca_05502_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 3.4e-17 92.8 92 53.3
CAN.G307.24 Capsicum annuum HOM05D001607 ORTHO05D001893 5.7e-17 92.0 92 53.3
Lsat_1_v5_gn_3_118641 Lactuca sativa HOM05D001607 ORTHO05D014307 8.3e-16 88.2 88 53.4
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 2.4e-15 86.7 153 37.3
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.7e-14 83.2 85 52.9
Ca_14559_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 3.8e-13 79.3 60 53.3
SHI29677 Sapria himalayana HOM05D001607 ORTHO05D001893 1.7e-08 63.9 99 41.4
Glyma.09G137300 Glycine max HOM05D001607 ORTHO05D001893 2.2e-08 63.5 42 71.4
SHI42886 Sapria himalayana HOM05D001607 ORTHO05D001893 3.7e-08 62.8 155 30.3
SHI45003 Sapria himalayana HOM05D001607 ORTHO05D001893 1.1e-07 61.2 155 29.7


User provided reference genes

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