Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 0.0e+00 1112.1 586 100.0
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.7e-257 892.5 509 87.6
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.0e-257 891.7 509 88.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-256 889.4 509 87.4
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.5e-256 888.6 509 87.8
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.3e-256 887.9 509 87.4
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-255 885.9 507 87.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.0e-216 756.1 499 78.0
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 9.7e-216 753.8 499 77.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.0e-205 719.5 560 68.4
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.2e-192 677.2 542 66.4
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.1e-190 670.6 460 74.3
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 7.2e-187 657.9 459 72.3
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 4.4e-184 648.7 473 70.4
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.7e-184 648.3 493 67.7
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 9.8e-184 647.5 552 63.8
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.8e-183 646.0 552 63.6
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.6e-181 640.2 552 63.0
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.7e-181 639.4 499 67.5
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 4.5e-181 638.6 530 64.9
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.0e-180 637.5 510 67.1
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.5e-179 633.6 548 63.7
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.8e-178 629.4 560 62.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 6.1e-178 628.2 520 65.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 6.1e-178 628.2 515 65.4
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 4.0e-177 625.5 495 67.3
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 4.4e-176 622.1 432 72.0
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.7e-176 621.7 560 61.8
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 7.5e-176 621.3 521 64.1
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 9.8e-176 620.9 524 64.9
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.2e-175 619.8 500 64.4
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.7e-175 619.0 460 69.8
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 8.3e-175 617.8 494 66.0
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.4e-174 617.1 542 63.3
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 4.1e-174 615.5 526 63.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 4.1e-174 615.5 494 65.6
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.6e-173 613.6 463 68.7
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.5e-173 612.5 470 67.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 6.6e-172 608.2 463 67.8
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.5e-171 607.1 520 64.2
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 3.3e-171 605.9 463 67.6
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 5.6e-171 605.1 467 69.6
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.2e-170 604.0 478 67.8
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 8.0e-170 601.3 469 67.8
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 3.1e-169 599.4 516 62.2
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 4.0e-169 599.0 456 68.0
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 8.9e-169 597.8 458 67.7
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.2e-168 597.4 548 61.3
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 2.0e-168 596.7 515 64.1
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 4.4e-168 595.5 528 60.4
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 5.8e-168 595.1 516 63.2
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 1.7e-167 593.6 628 55.9
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 4.9e-167 592.0 512 61.3
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 6.4e-167 591.7 523 61.0
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 6.4e-167 591.7 463 65.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.4e-166 590.5 463 64.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.4e-166 590.5 371 81.4
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.2e-165 587.4 474 64.6
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.0e-165 586.6 457 67.6
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 2.7e-165 586.3 564 60.1
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 4.6e-165 585.5 472 62.9
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 3.0e-164 582.8 513 59.8
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.9e-164 582.4 511 63.2
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 8.6e-164 581.3 514 60.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 8.6e-164 581.3 480 63.8
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.9e-163 580.1 496 61.1
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 7.3e-163 578.2 527 60.0
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 2.8e-162 576.2 552 56.7
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.6e-162 575.9 512 61.3
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.1e-161 574.3 461 65.3
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.8e-161 573.5 519 61.3
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 8.9e-161 571.2 468 61.8
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.5e-160 570.5 547 58.5
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.5e-160 568.2 486 62.8
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 9.8e-160 567.8 464 62.5
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.7e-159 567.0 516 58.7
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.7e-159 567.0 516 58.7
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 3.7e-159 565.8 516 58.5
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 3.7e-159 565.8 440 66.1
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 6.4e-159 565.1 519 60.3
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 6.4e-159 565.1 467 62.7
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.1e-158 561.6 514 60.5
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.6e-157 560.5 516 58.5
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 3.5e-157 559.3 516 58.5
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.3e-155 552.7 462 64.1
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 5.6e-155 552.0 425 65.4
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.8e-154 549.7 516 57.9
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 3.1e-153 546.2 454 63.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 2.6e-152 543.1 551 55.5
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.3e-151 540.8 514 57.8
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 1.1e-150 537.7 451 63.4
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.4e-150 537.3 505 58.0
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 2.1e-149 533.5 417 64.7
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-147 527.7 467 60.4
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 3.3e-147 526.2 546 54.9
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.2e-144 517.7 546 54.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 4.8e-138 495.7 509 53.6
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 8.1e-138 495.0 668 46.0
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 6.9e-137 491.9 324 76.9
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.2e-136 491.1 345 72.5
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.2e-134 483.0 483 53.8
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 7.1e-134 481.9 500 54.4
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.2e-133 481.1 506 55.1
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.3e-132 477.6 456 57.9
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.1e-130 468.4 476 55.0
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.9e-128 461.5 401 60.6
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.9e-124 449.5 463 52.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 5.0e-103 379.4 323 60.4
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.9e-102 377.5 309 65.4
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.3e-100 370.5 470 48.3
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.1e-97 360.1 219 82.6
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 5.9e-96 355.9 364 52.2
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.3e-91 340.1 474 44.7
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 4.1e-89 333.2 260 65.4
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.2e-87 327.4 277 57.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 6.3e-74 282.7 510 36.1
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.2e-67 261.9 493 35.7
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 6.6e-63 246.1 287 47.0
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.1e-57 226.9 476 31.5
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.7e-47 194.9 245 47.8
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 3.6e-37 160.6 132 56.1
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.1e-33 149.1 230 33.9
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.6e-32 143.7 95 72.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 6.9e-28 129.8 238 38.2
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 6.4e-26 123.2 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 5.1e-23 113.6 63 84.1
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 3.3e-22 110.9 163 43.6
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.6e-14 83.6 83 53.0
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.4e-11 74.3 94 54.3
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 5.6e-06 57.0 49 61.2


User provided reference genes

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