Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 0.0e+00 1177.9 586 100.0
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-306 1054.3 589 90.7
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-306 1053.9 589 90.7
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.0e-302 1042.7 572 91.8
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-300 1033.9 589 90.0
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.1e-299 1030.8 594 88.6
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.9e-298 1026.9 578 90.7
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.3e-272 940.3 603 82.3
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.4e-267 926.0 589 79.8
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 1.6e-266 922.5 590 79.7
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 5.5e-227 791.2 618 67.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 9.4e-219 763.8 626 63.4
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.4e-211 740.0 598 64.7
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 2.5e-211 739.2 594 65.3
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 1.8e-209 733.0 618 63.1
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 3.0e-209 732.3 617 63.2
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 3.9e-209 731.9 613 62.8
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 5.2e-209 731.5 601 64.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 2.6e-208 729.2 617 61.4
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 4.4e-208 728.4 617 63.2
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.2e-207 726.1 614 62.1
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 1.8e-206 723.0 625 61.8
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 5.3e-206 721.5 611 61.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 3.5e-205 718.8 591 63.5
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.8e-204 715.3 598 61.9
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 4.2e-203 711.8 626 60.5
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.0e-201 707.2 587 60.3
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.4e-201 706.8 597 62.3
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 2.6e-200 702.6 606 60.4
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 7.5e-200 701.0 597 61.5
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.3e-199 700.3 616 61.0
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 3.7e-199 698.7 600 61.2
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 3.7e-199 698.7 593 62.6
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.1e-198 697.2 616 61.2
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 4.1e-198 695.3 499 71.3
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 4.1e-198 695.3 590 62.4
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 9.1e-198 694.1 592 61.5
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.2e-197 693.7 618 60.0
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 3.5e-197 692.2 599 59.8
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 4.5e-197 691.8 586 61.9
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 2.9e-196 689.1 601 60.1
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 3.8e-196 688.7 590 61.9
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.8e-196 688.7 590 61.4
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.1e-195 687.2 602 59.0
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 3.2e-195 685.6 578 59.9
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 7.2e-195 684.5 596 61.7
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 2.7e-194 682.6 618 58.3
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 6.1e-194 681.4 563 62.5
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.0e-193 680.6 588 61.4
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.0e-193 680.6 598 59.7
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.4e-193 680.2 597 61.0
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 2.3e-193 679.5 606 59.7
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 4.0e-193 678.7 612 57.5
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 4.0e-193 678.7 520 66.9
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.0e-192 676.4 564 61.7
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 1.7e-191 673.3 522 66.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 2.2e-191 672.9 634 56.8
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 2.8e-191 672.5 604 60.1
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 4.8e-191 671.8 603 59.9
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.8e-190 669.8 589 60.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 4.5e-189 665.2 603 59.5
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 7.7e-189 664.5 591 60.2
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 7.7e-189 664.5 591 59.1
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.0e-188 664.1 577 59.3
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.7e-188 663.3 591 59.6
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.7e-188 663.3 601 58.7
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 3.8e-188 662.1 591 59.1
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 6.5e-188 661.4 595 59.7
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.1e-187 660.6 495 68.5
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 7.2e-187 657.9 576 60.2
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 7.2e-187 657.9 563 61.5
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 3.6e-186 655.6 493 66.3
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 4.7e-186 655.2 606 58.6
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 3.7e-183 645.6 641 54.0
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 4.9e-183 645.2 585 59.8
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 6.3e-183 644.8 482 70.1
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.2e-181 640.6 613 56.4
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.5e-181 639.0 600 58.0
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 2.3e-180 636.3 564 58.5
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.5e-176 623.6 657 51.9
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.4e-174 617.1 376 85.4
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 2.1e-170 603.2 520 61.0
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 2.3e-169 599.7 511 61.8
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 6.8e-169 598.2 567 56.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 3.7e-167 592.4 564 56.4
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 5.4e-166 588.6 496 62.7
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 7.0e-166 588.2 599 52.9
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.5e-163 580.5 604 54.3
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 7.3e-163 578.2 584 56.3
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.9e-158 563.5 458 59.8
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 1.7e-156 557.0 464 59.1
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.9e-156 555.8 577 52.2
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.9e-155 553.5 490 59.8
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 9.5e-155 551.2 454 63.9
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.1e-153 547.7 430 64.0
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.4e-150 537.3 496 57.3
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.1e-147 527.7 387 65.9
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 3.2e-134 483.0 596 48.7
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.8e-130 469.2 353 68.0
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 1.3e-124 451.1 630 41.6
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 4.8e-122 442.6 597 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 2.1e-117 427.2 523 45.5
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 3.9e-116 422.9 339 65.2
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 1.4e-110 404.4 488 50.4
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.0e-100 371.7 404 49.3
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 2.3e-100 370.5 312 61.9
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 2.0e-99 367.5 470 42.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.0e-91 340.9 295 61.0
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.7e-83 312.0 165 92.1
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.7e-83 312.0 165 92.1
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.8e-82 309.7 163 92.6
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.8e-82 309.7 163 92.6
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-71 275.0 325 45.5
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 5.0e-71 273.1 237 57.8
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 3.0e-68 263.8 214 58.9
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 7.8e-64 249.2 255 59.6
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 7.3e-62 242.7 388 36.6
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 4.7e-61 240.0 174 65.5
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.0e-59 234.6 197 59.9
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 1.1e-57 228.8 154 67.5
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 3.0e-55 220.7 225 48.9
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 6.4e-50 203.0 190 58.9
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-47 194.9 165 64.8
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 8.6e-47 192.6 163 65.0
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.6e-45 188.3 89 96.6
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 4.4e-43 180.3 164 51.2
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 5.4e-41 173.3 226 44.2
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.9e-38 164.9 491 29.5
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 4.0e-36 157.1 115 64.3
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 5.2e-36 156.8 213 39.9
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 3.2e-33 147.5 362 29.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.9e-30 138.3 133 59.4
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.6e-29 135.2 134 47.8
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 7.1e-25 119.8 163 46.6
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.6e-24 118.6 113 59.3
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 8.7e-23 112.8 171 36.3
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.9e-22 111.7 141 41.1
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 3.1e-20 104.4 133 48.9
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 2.4e-17 94.7 106 59.4
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.1e-16 91.7 45 86.7
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-15 89.4 165 33.3
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.9e-14 85.1 85 55.3
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 3.3e-14 84.3 109 39.4
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 9.9e-11 72.8 96 38.5
RcHm_v2.0_Chr2g0085031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.3e-07 62.4 46 73.9
RcHm_v2.0_Chr2g0113271 Rosa chinensis HOM05D002465 ORTHO05D050744 1.8e-07 62.0 41 75.6
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 8.7e-07 59.7 102 32.4
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 4.3e-06 57.4 50 48.0
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 9.6e-06 56.2 64 46.9
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 9.6e-06 56.2 72 44.4


User provided reference genes

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