Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 0.0e+00 1405.6 702 100.0
FAN01G1663 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.0e-272 943.3 713 70.8
FAN06G3679 Fragaria x ananassa HOM05D010729 ORTHO05D011897 3.7e-270 934.9 705 70.5
FvH4_7g30290 Fragaria vesca HOM05D010729 ORTHO05D011897 6.5e-267 924.1 705 70.1
FAN10G1814 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.4e-255 884.8 698 69.1
FAN03G3518 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.1e-253 880.2 711 66.8
FAN03G1023 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.1e-245 851.7 630 70.3
FAN10G3254 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.8e-225 785.8 593 70.0
FAN06G0857 Fragaria x ananassa HOM05D010729 ORTHO05D011897 7.8e-220 767.7 585 69.6
FAN03G3377 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.4e-192 676.4 695 57.3
FAN03G0819 Fragaria x ananassa HOM05D010729 ORTHO05D011897 5.6e-178 628.6 713 54.7
FAN01G0074 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.3e-115 420.6 365 64.1
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 2.3e-78 297.7 740 34.7
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 3.1e-75 287.3 844 32.5
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.3e-49 202.2 616 32.6
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 6.5e-49 199.9 251 51.4
FAN09G1963 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.3e-48 196.1 201 58.2
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 1.4e-40 172.2 611 30.9
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 3.7e-36 157.5 557 30.5
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.5e-34 152.1 654 27.5
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 4.5e-34 150.6 545 29.4
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 2.9e-33 147.9 509 30.1
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 7.2e-32 143.3 710 26.2
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 2.5e-24 118.2 587 27.4
FAN03G1424 Fragaria x ananassa HOM05D010729 ORTHO05D011897 6.1e-23 113.6 137 47.4
FvH4_7g30341 Fragaria vesca HOM05D010729 ORTHO05D011897 1.1e-19 102.8 86 68.6
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.8e-19 102.1 637 27.3
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 9.1e-19 99.8 749 23.6
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 2.6e-18 98.2 657 27.2
RcHm_v2.0_Chr2g0098011 Rosa chinensis HOM05D010729 ORTHO05D011897 3.5e-18 97.8 109 53.2
FAN01G1321 Fragaria x ananassa HOM05D000644 ORTHO05D000504 4.5e-18 97.4 110 55.5
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 2.9e-17 94.7 196 37.8
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 9.4e-16 89.7 870 23.2
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.2e-15 89.4 260 33.1
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 1.6e-15 89.0 854 22.8
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.1e-15 88.6 254 31.1
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 8.0e-15 86.7 580 25.5
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.5e-13 82.4 233 30.5
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 2.0e-13 82.0 249 29.7
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 9.7e-13 79.7 244 29.5
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.7e-12 79.0 326 28.8
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 2.2e-12 78.6 271 29.9
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 6.3e-12 77.0 840 22.7
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.4e-11 75.9 255 30.2
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 2.4e-11 75.1 285 29.1
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 3.1e-11 74.7 267 27.3
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.1e-11 74.7 355 25.9
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 4.1e-11 74.3 295 27.8
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.3e-11 73.9 243 29.6
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 7.0e-11 73.6 305 26.6
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 7.0e-11 73.6 248 28.6
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 9.1e-11 73.2 749 22.7
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 9.1e-11 73.2 287 27.5
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 1.2e-10 72.8 269 26.4
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 1.6e-10 72.4 192 33.9
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 1.6e-10 72.4 268 27.6
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 2.7e-10 71.6 290 27.2
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.5e-10 71.2 244 29.1
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 4.5e-10 70.9 267 26.6
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.5e-10 70.9 267 27.7
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.5e-10 70.9 244 29.1
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.5e-10 70.9 267 28.1
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.9e-10 70.5 145 37.2
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 5.9e-10 70.5 345 27.0
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 7.7e-10 70.1 324 27.2
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.7e-10 70.1 267 27.7
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 7.7e-10 70.1 252 29.0
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 1.0e-09 69.7 267 27.7
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.0e-09 69.7 246 28.5
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.7e-09 68.9 352 27.0
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.2e-09 68.6 253 26.9
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 2.2e-09 68.6 245 27.3
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 2.2e-09 68.6 352 27.0
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 2.2e-09 68.6 575 23.8
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.9e-09 68.2 267 27.0
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.9e-09 68.2 246 27.6
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 3.8e-09 67.8 247 27.1
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 3.8e-09 67.8 250 27.2
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 5.0e-09 67.4 109 40.4
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 6.5e-09 67.0 267 26.6
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 6.5e-09 67.0 251 27.5
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 6.5e-09 67.0 246 28.0
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 8.5e-09 66.6 458 24.0
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 1.1e-08 66.2 250 28.4
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 1.1e-08 66.2 254 27.2
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.1e-08 66.2 317 26.8
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 1.1e-08 66.2 364 25.5
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 1.1e-08 66.2 294 26.9
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 1.5e-08 65.9 252 27.0
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.5e-08 65.9 267 27.0
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.9e-08 65.5 251 25.9
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 1.9e-08 65.5 269 27.1
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.9e-08 65.5 351 26.5
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.9e-08 65.5 241 28.2
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.5e-08 65.1 241 28.6
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 2.5e-08 65.1 184 29.9
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 4.2e-08 64.3 246 27.6
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 4.2e-08 64.3 270 27.8
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 5.5e-08 63.9 247 25.9
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 7.2e-08 63.5 267 25.8
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 7.2e-08 63.5 222 29.7
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 9.4e-08 63.2 206 30.6
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 1.6e-07 62.4 250 26.8
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 1.6e-07 62.4 115 38.3
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 2.1e-07 62.0 257 28.4
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 3.6e-07 61.2 252 29.4
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 3.6e-07 61.2 239 26.8
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 3.6e-07 61.2 115 36.5
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 4.7e-07 60.8 239 27.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 4.7e-07 60.8 250 26.4
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 6.1e-07 60.5 270 26.3
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 8.0e-07 60.1 113 38.1
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 8.0e-07 60.1 249 26.9
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 8.0e-07 60.1 226 27.9
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 8.0e-07 60.1 208 28.8
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 1.0e-06 59.7 247 25.9
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.0e-06 59.7 309 27.2
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.4e-06 59.3 125 34.4
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.8e-06 58.9 278 24.8
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.8e-06 58.9 249 27.3
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.8e-06 58.9 236 28.0
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.3e-06 58.5 317 27.1
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 3.0e-06 58.2 251 25.9
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 4.0e-06 57.8 250 26.4
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 4.0e-06 57.8 249 26.9
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 4.0e-06 57.8 247 26.3
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 5.2e-06 57.4 249 25.7
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 6.8e-06 57.0 972 20.6
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 6.8e-06 57.0 227 28.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 8.8e-06 56.6 165 31.5


User provided reference genes

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