Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.4e-187 659.4 324 100.0
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.4e-157 557.4 323 85.1
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.4e-155 553.1 323 84.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-155 552.0 319 85.0
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.3e-155 551.2 323 84.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-152 543.5 337 80.7
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-152 543.1 337 80.4
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 4.9e-145 518.1 321 79.8
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 3.7e-140 501.9 325 76.6
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 8.2e-124 447.6 320 67.2
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.3e-121 440.3 321 68.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 6.7e-118 427.9 316 67.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.7e-117 424.9 314 67.2
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.7e-116 422.2 317 65.3
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 8.2e-116 421.0 339 61.7
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.4e-115 420.2 317 65.0
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.4e-115 420.2 380 57.9
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 7.0e-115 417.9 353 61.2
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-114 416.4 297 69.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.5e-114 415.6 285 68.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 7.7e-114 414.5 330 64.5
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 8.5e-113 411.0 290 66.6
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.1e-112 410.6 321 65.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 7.2e-112 407.9 317 62.1
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.4e-110 403.7 322 62.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.3e-110 402.9 305 68.2
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.6e-109 399.4 319 61.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.6e-109 399.4 318 61.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 7.5e-109 397.9 315 63.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.3e-108 397.1 325 60.3
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.3e-108 397.1 323 62.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.7e-108 396.7 322 63.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 4.8e-108 395.2 323 62.5
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.8e-108 395.2 292 64.7
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.8e-108 395.2 292 64.7
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.1e-107 394.0 323 63.2
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 5.3e-107 391.7 317 59.6
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 5.3e-107 391.7 322 61.5
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 7.0e-107 391.3 316 62.0
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.1e-107 391.0 326 60.4
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.1e-107 391.0 286 65.0
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 9.1e-107 391.0 321 61.4
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 7.7e-106 387.9 322 59.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.3e-105 387.1 286 65.0
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.3e-105 387.1 321 61.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.5e-105 384.8 322 62.4
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.5e-105 384.8 322 62.4
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 8.5e-105 384.4 286 64.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 8.5e-105 384.4 318 61.6
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.5e-104 382.9 293 63.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.5e-104 382.9 321 60.1
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.2e-104 382.5 275 65.5
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 9.4e-104 380.9 271 67.5
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.0e-103 377.9 233 76.4
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.0e-102 375.9 355 56.9
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.8e-102 374.4 379 53.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.2e-101 374.0 320 59.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.5e-101 373.6 297 65.0
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 2.0e-101 373.2 321 58.9
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.2e-100 369.8 302 59.9
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.2e-100 369.8 254 67.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.8e-100 368.6 326 57.4
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.1e-99 367.5 301 61.5
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.4e-99 366.3 326 56.4
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.4e-99 365.2 288 62.2
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.4e-99 365.2 321 57.3
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.2e-98 364.0 285 63.5
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.0e-98 363.2 319 58.6
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 2.7e-98 362.8 321 58.3
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.7e-97 360.1 302 60.6
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.3e-97 359.8 286 62.9
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 2.9e-97 359.4 311 58.2
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.0e-97 358.6 288 63.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 6.6e-97 358.2 320 58.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 8.6e-97 357.8 345 56.8
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.5e-96 356.3 319 57.4
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.5e-96 356.3 322 59.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 3.3e-96 355.9 297 60.9
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 4.2e-96 355.5 306 60.1
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.2e-96 355.5 317 57.1
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 9.5e-96 354.4 297 60.6
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 9.5e-96 354.4 277 63.9
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.1e-95 353.2 293 60.1
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.1e-95 353.2 288 60.8
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.8e-95 352.8 283 62.9
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.6e-95 352.4 324 57.7
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 6.1e-95 351.7 318 57.2
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 6.1e-95 351.7 323 55.7
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 8.0e-95 351.3 320 55.9
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 8.0e-95 351.3 302 58.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.0e-94 350.9 295 60.0
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.8e-94 350.1 253 66.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.0e-94 349.4 287 62.4
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 3.0e-94 349.4 350 52.9
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.0e-94 349.0 281 60.9
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 8.9e-94 347.8 257 62.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-93 346.7 248 64.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.6e-93 346.3 214 79.9
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.4e-93 345.5 287 61.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.7e-92 343.6 282 60.3
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.2e-92 343.2 280 59.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 8.3e-92 341.3 318 56.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-91 340.5 371 50.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 3.2e-91 339.3 281 59.8
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.2e-91 337.8 323 55.4
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.5e-90 335.9 282 58.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 4.5e-90 335.5 303 57.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.0e-89 334.3 211 75.8
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.5e-88 329.7 341 52.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 4.7e-87 325.5 291 58.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.7e-87 325.5 318 53.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 6.1e-87 325.1 258 61.6
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.9e-83 313.5 226 65.9
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 2.8e-79 299.7 364 45.9
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.7e-79 298.9 334 49.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.8e-78 297.0 308 53.2
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.0e-77 293.5 259 57.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.2e-75 286.2 292 50.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.3e-73 280.0 199 70.9
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-72 277.3 238 58.4
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 8.1e-71 271.6 230 54.8
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.9e-67 260.4 235 54.9
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.0e-65 253.1 211 59.7
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 3.1e-62 243.0 273 46.2
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-61 240.4 233 49.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.0e-61 240.4 233 49.8
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 3.4e-61 239.6 155 71.6
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.1e-59 231.9 141 72.3
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 7.1e-59 231.9 192 59.9
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 9.3e-59 231.5 253 44.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.5e-58 229.6 194 59.8
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.1e-55 220.3 213 55.9
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.0e-54 216.1 161 66.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.7e-49 200.7 163 62.6
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.0e-49 199.9 214 50.5
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.9e-48 197.2 317 41.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.6e-47 193.0 193 52.3
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.6e-45 185.3 164 59.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 9.9e-45 184.9 244 39.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.4e-43 180.3 196 50.0
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 5.4e-43 179.1 157 57.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.1e-40 171.4 296 37.8
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 9.0e-38 161.8 164 51.2
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.7e-28 131.0 107 57.0
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.8e-28 129.8 150 48.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 7.9e-26 122.1 169 47.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.6e-23 114.4 76 72.4
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.1e-22 111.7 274 31.4
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.5e-21 106.3 82 67.1
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 6.5e-20 102.4 106 48.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.1e-19 101.7 72 63.9
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.2e-19 100.1 72 59.7
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.3e-16 89.7 71 59.2
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.4e-11 74.7 185 31.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.5e-11 73.9 118 39.8
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.6e-10 71.2 36 86.1
DCAR_008881 Daucus carota HOM05D000120 ORTHO05D021885 1.4e-06 58.2 56 57.1


User provided reference genes

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