Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0378211 Rosa chinensis HOM05D000457 ORTHO05D008967 2.7e-92 342.0 179 100.0
FAN01G0381 Fragaria x ananassa HOM05D000457 ORTHO05D008967 4.8e-73 278.1 177 84.2
FAN03G1511 Fragaria x ananassa HOM05D000457 ORTHO05D008967 2.4e-72 275.8 177 83.6
FAN06G1096 Fragaria x ananassa HOM05D000457 ORTHO05D008967 5.8e-71 271.2 178 83.7
FvH4_7g30160 Fragaria vesca HOM05D000457 ORTHO05D008967 6.4e-70 267.7 178 82.6
FAN06G1897 Fragaria x ananassa HOM05D000457 ORTHO05D008967 1.1e-64 250.4 178 78.1
Prupe.2G300100 Prunus persica HOM05D000457 ORTHO05D008967 7.4e-58 227.6 159 76.7
MD01G1207500 Malus domestica HOM05D000457 ORTHO05D008967 1.1e-53 213.8 156 71.2
QL09p012992 Quercus lobata HOM05D000457 ORTHO05D008967 1.4e-53 213.4 175 66.3
Cfa016281 Carpinus fangiana HOM05D000457 ORTHO05D008967 4.6e-52 208.4 170 67.1
Haze_00037 Corylus avellana HOM05D000457 ORTHO05D008967 4.6e-52 208.4 172 66.9
CiPaw.06G002900 Carya illinoinensis HOM05D000457 ORTHO05D008967 4.3e-50 201.8 177 63.3
Dinv28392 Davidia involucrata HOM05D000457 ORTHO05D003394 7.4e-50 201.1 177 62.7
Sabra04G0052800 Salix brachista HOM05D000457 ORTHO05D008967 7.4e-50 201.1 170 64.1
Manes.06G151800 Manihot esculenta HOM05D000457 ORTHO05D008967 1.3e-49 200.3 176 62.5
Atru.chr1.382 Acer truncatum HOM05D000457 ORTHO05D008967 1.6e-49 199.9 175 64.0
Atru.chr1.366 Acer truncatum HOM05D000457 ORTHO05D008967 2.8e-49 199.1 189 60.3
Atru.ctg97_1.13 Acer truncatum HOM05D000457 ORTHO05D008967 2.8e-49 199.1 189 60.3
Actinidia34151 Actinidia chinensis HOM05D000457 ORTHO05D008967 3.1e-48 195.7 161 64.0
CANSAT11G1185 Cannabis sativa HOM05D000457 ORTHO05D008967 3.1e-48 195.7 161 62.1
Potri.004G079400 Populus trichocarpa HOM05D000457 ORTHO05D008967 3.1e-48 195.7 169 63.3
Dinv41815 Davidia involucrata HOM05D000457 ORTHO05D008967 4.1e-48 195.3 175 61.1
Thecc.03G183200 Theobroma cacao HOM05D000457 ORTHO05D008967 4.1e-48 195.3 157 66.2
Thecc.K0007400 Theobroma cacao HOM05D000457 ORTHO05D008967 4.1e-48 195.3 157 66.2
TAR374G0573 Trochodendron aralioides HOM05D000457 ORTHO05D008967 9.0e-48 194.1 173 60.7
MELO3C005837.2 Cucumis melo HOM05D000457 ORTHO05D008967 1.2e-47 193.7 170 62.4
CsaV3_5G001090 Cucumis sativus L. HOM05D000457 ORTHO05D008967 1.2e-47 193.7 173 63.0
Duzib068G0228 Durio zibethinus HOM05D000457 ORTHO05D008967 1.5e-47 193.4 157 65.0
Eucgr.K00291 Eucalyptus grandis HOM05D000457 ORTHO05D008967 4.5e-47 191.8 157 65.0
Cc02_g02450 Coffea canephora HOM05D000457 ORTHO05D008967 5.9e-47 191.4 162 62.3
arahy.Tifrunner.gnm1.ann1.82SWC8 Arachis hypogaea HOM05D000457 ORTHO05D008967 1.7e-46 189.9 159 64.2
arahy.Tifrunner.gnm1.ann1.E24S63 Arachis hypogaea HOM05D000457 ORTHO05D008967 1.7e-46 189.9 159 64.2
TWI23G0899 Tripterygium wilfordii HOM05D000457 ORTHO05D008967 1.4e-45 186.8 175 58.3
Rhsim03G0190500 Rhododendron simsii HOM05D000457 ORTHO05D008967 1.9e-45 186.4 165 61.8
AUR62021132 Chenopodium quinoa HOM05D000457 ORTHO05D003394 4.2e-45 185.3 155 63.2
EL10Ac3g05431 Beta vulgaris HOM05D000457 ORTHO05D008967 5.5e-45 184.9 164 64.6
vmacro06631 Vaccinium macrocarpon HOM05D000457 ORTHO05D008967 9.4e-45 184.1 164 61.6
AUR62031413 Chenopodium quinoa HOM05D000457 ORTHO05D008967 1.2e-44 183.7 155 62.6
Lj8C18T9 Lonicera japonica HOM05D000457 ORTHO05D008967 2.7e-44 182.6 164 61.6
Gorai.007G012500 Gossypium raimondii HOM05D000457 ORTHO05D008967 4.6e-44 181.8 158 62.7
Ah.07g206630 Amaranthus hybridus HOM05D000457 ORTHO05D008967 1.4e-43 180.3 155 59.4
Aqoxy7G00247 Aquilegia oxysepala HOM05D000457 ORTHO05D008967 1.4e-43 180.3 157 60.5
Ca_25424_v3 Cicer arietinum L. HOM05D000457 ORTHO05D008967 1.8e-43 179.9 162 61.7
Lj2g0015355 Lotus japonicus HOM05D000457 ORTHO05D008967 1.8e-43 179.9 158 62.7
PGR142G3689 Punica granatum HOM05D000457 ORTHO05D008967 1.8e-43 179.9 159 64.2
Duzib084G1351 Durio zibethinus HOM05D000457 ORTHO05D008967 3.0e-43 179.1 156 61.5
Lalb_Chr03g0034781 Lupinus albus HOM05D000457 ORTHO05D008967 3.0e-43 179.1 157 60.5
Nn5g28157 Nelumbo nucifera HOM05D000457 ORTHO05D008967 3.9e-43 178.7 157 60.5
SalBow2G1735 Salvia bowleyana HOM05D000457 ORTHO05D008967 5.1e-43 178.3 173 57.2
Psat0s823g0040 Pisum sativum HOM05D000457 ORTHO05D008967 8.8e-43 177.6 164 59.1
TPR.G33500 Trifolium pratense HOM05D000457 ORTHO05D008967 8.8e-43 177.6 162 58.6
SalBow2G2252 Salvia bowleyana HOM05D000457 ORTHO05D008967 1.1e-42 177.2 165 58.2
MBI11_g04753_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D008967 1.5e-42 176.8 154 62.3
Peaxi162Scf00444g00131 Petunia axillaris HOM05D000457 ORTHO05D008967 2.0e-42 176.4 154 59.7
Hund04782 Selenicereus undatus HOM05D000457 ORTHO05D008967 2.0e-42 176.4 155 60.0
GSVIVG01028871001 Vitis vinifera HOM05D000457 ORTHO05D008967 3.3e-42 175.6 166 56.6
Glyma.16G179700 Glycine max HOM05D000457 ORTHO05D008967 4.3e-42 175.3 159 61.6
Phvul.004G109700 Phaseolus vulgaris HOM05D000457 ORTHO05D008967 9.7e-42 174.1 160 59.4
Hma1.2p1_0274F.1_g110210 Hydrangea macrophylla HOM05D000457 ORTHO05D008967 1.7e-41 173.3 162 58.0
Nitab4.5_0000084g0410 Nicotiana tabacum HOM05D000457 ORTHO05D008967 1.7e-41 173.3 154 58.4
MBI18_g45289_MAGBIO Magnolia biondii HOM05D000457 ORTHO05D008967 2.2e-41 172.9 154 61.7
BcaB05g21965 Brassica carinata HOM05D000457 ORTHO05D008967 2.8e-41 172.6 149 64.4
Cpa.g.sc107.101 Carica papaya HOM05D000457 ORTHO05D008967 2.8e-41 172.6 125 75.2
Glyma.09G133100 Glycine max HOM05D000457 ORTHO05D008967 3.7e-41 172.2 159 61.0
VMungo0464G2072 Vigna mungo HOM05D000457 ORTHO05D008967 8.2e-41 171.0 161 57.8
Aa31LG3G8900 Aethionema arabicum HOM05D000457 ORTHO05D008967 1.1e-40 170.6 161 59.6
Migut.F01090 Erythranthe guttata HOM05D000457 ORTHO05D008967 1.1e-40 170.6 175 55.4
Nitab4.5_0000572g0130 Nicotiana tabacum HOM05D000457 ORTHO05D008967 1.1e-40 170.6 158 56.3
A02p11750 Brassica napus HOM05D000457 ORTHO05D008967 1.4e-40 170.2 149 63.1
BraA02t06240Z Brassica rapa HOM05D000457 ORTHO05D008967 1.4e-40 170.2 149 63.1
BcaC03g14521 Brassica carinata HOM05D000457 ORTHO05D008967 2.4e-40 169.5 149 63.1
BcaC03g14522 Brassica carinata HOM05D000457 ORTHO05D008967 2.4e-40 169.5 149 63.1
C02p19570 Brassica napus HOM05D000457 ORTHO05D008967 2.4e-40 169.5 149 63.1
Sc19g0001310 Simmondsia chinensis HOM05D000457 ORTHO05D008967 2.4e-40 169.5 157 59.9
ClCG01G000950 Citrullus lanatus HOM05D000457 ORTHO05D008967 3.1e-40 169.1 144 63.9
BolC2t08094H Brassica oleracea HOM05D000457 ORTHO05D008967 5.3e-40 168.3 149 63.1
BNapus_Darmor_BZH_scaffold_232p00100 Brassica napus HOM05D000457 ORTHO05D008967 9.1e-40 167.5 149 62.4
Ciclev10006167m.g Citrus clementina HOM05D000457 ORTHO05D008967 9.1e-40 167.5 148 64.2
Sed0009016 Sechium edule HOM05D000457 ORTHO05D008967 2.0e-39 166.4 147 63.3
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.6e-39 166.0 167 56.9
Sp6g14750 Schrenkiella parvula HOM05D000457 ORTHO05D008967 3.4e-39 165.6 161 58.4
Thhalv10014901m.g Eutrema salsugineum HOM05D000457 ORTHO05D008967 5.9e-39 164.9 161 57.8
Nitab4.5_0000084g0330 Nicotiana tabacum HOM05D000457 ORTHO05D008967 1.7e-38 163.3 154 55.8
Carub.0008s1267 Capsella rubella HOM05D000457 ORTHO05D008967 2.9e-38 162.5 166 56.0
Medtr0022s0360 Medicago truncatula HOM05D000457 ORTHO05D008967 2.9e-38 162.5 162 55.6
QL09p013029 Quercus lobata HOM05D000457 ORTHO05D008967 5.0e-38 161.8 149 63.1
AL8G27010 Arabidopsis lyrata HOM05D000457 ORTHO05D008967 8.5e-38 161.0 162 58.0
DCAR_010660 Daucus carota HOM05D000457 ORTHO05D008967 1.1e-37 160.6 161 55.3
THA.LOC104811961 Tarenaya hassleriana HOM05D000457 ORTHO05D008967 1.9e-37 159.8 164 56.1
Lsat_1_v5_gn_8_6640 Lactuca sativa HOM05D000457 ORTHO05D008967 7.2e-37 157.9 157 54.8
PSO782G3743 Papaver somniferum HOM05D000457 ORTHO05D008967 1.2e-36 157.1 161 57.1
COL.COLO4_10064 Corchorus olitorius HOM05D000457 ORTHO05D008967 1.4e-35 153.7 131 65.6
PSO478G0375 Papaver somniferum HOM05D000457 ORTHO05D008967 1.4e-35 153.7 172 54.1
PSO478G0698 Papaver somniferum HOM05D000457 ORTHO05D008967 1.8e-35 153.3 161 55.3
CDE02G2459 Ceratophyllum demersum HOM05D000457 ORTHO05D008967 1.5e-34 150.2 160 55.6
Gohir.A11G011800 Gossypium hirsutum HOM05D000457 ORTHO05D008967 2.6e-34 149.4 137 62.0
Medtr6g048060 Medicago truncatula HOM05D000457 ORTHO05D008967 2.8e-33 146.0 144 56.2
Zm00001eb021940 Zea mays HOM05D000457 ORTHO05D008967 3.5e-31 139.0 158 50.6
ATR0661G481 Amborella trichopoda HOM05D000457 ORTHO05D008967 4.5e-31 138.7 156 53.8
SEGI_15235 Sequoiadendron giganteum HOM05D000457 ORTHO05D008967 6.5e-30 134.8 148 52.7
Mapoly0154s0007 Marchantia polymorpha HOM05D000457 ORTHO05D008967 5.5e-29 131.7 165 49.1
HPP92_014517 Vanilla planifolia HOM05D000457 ORTHO05D008967 1.1e-26 124.0 104 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3094 Anthoceros agrestis HOM05D000457 ORTHO05D008967 1.6e-23 113.6 152 43.4
Nitab4.5_0000572g0080 Nicotiana tabacum HOM05D000457 ORTHO05D008967 2.0e-23 113.2 117 53.8
MD07G1278200 Malus domestica HOM05D000457 ORTHO05D008967 8.5e-22 107.8 77 74.0
MSTRG.8715 Avicennia marina HOM05D000457 ORTHO05D008967 4.2e-21 105.5 100 59.0
CARHR265530 Cardamine hirsuta HOM05D000457 ORTHO05D008967 1.4e-19 100.5 63 71.4
Gohir.D11G011001 Gossypium hirsutum HOM05D000457 ORTHO05D008967 1.5e-18 97.1 89 64.0
Glyma.07G227900 Glycine max HOM05D000457 ORTHO05D008967 5.7e-18 95.1 133 44.4
CSS0021842 Camellia sinensis var. sinensis HOM05D000457 ORTHO05D008967 6.3e-17 91.7 80 60.0
CBR_g40116 Chara braunii HOM05D000173 ORTHO05D006747 1.3e-14 84.0 60 60.0
AT5G52545 Arabidopsis thaliana HOM05D000457 ORTHO05D008967 2.6e-10 69.7 79 58.2
EL10Ac2g04280 Beta vulgaris HOM05D000457 ORTHO05D008967 3.1e-08 62.8 97 50.5
ATR0807G033 Amborella trichopoda HOM05D001197 ORTHO05D000124 7.0e-08 61.6 101 33.7
Prupe.5G241100 Prunus persica HOM05D001197 ORTHO05D000124 7.0e-08 61.6 108 33.3
Nn2g12601 Nelumbo nucifera HOM05D001197 ORTHO05D000124 1.6e-07 60.5 113 31.0
CiPaw.15G151100 Carya illinoinensis HOM05D001197 ORTHO05D000124 2.0e-07 60.1 109 32.1
CARHR066530 Cardamine hirsuta HOM05D001197 ORTHO05D000124 2.7e-07 59.7 103 32.0
PGSC0003DMG400008817 Solanum tuberosum HOM05D001197 ORTHO05D000124 2.7e-07 59.7 114 32.5
Sopen09g005950 Solanum pennellii HOM05D001197 ORTHO05D000124 4.5e-07 58.9 104 31.7
Aa31LG4G3740 Aethionema arabicum HOM05D001197 ORTHO05D000124 7.7e-07 58.2 95 35.8
PSO063G5578 Papaver somniferum HOM05D001197 ORTHO05D000124 7.7e-07 58.2 104 33.7
Solyc09g011210.4 Solanum lycopersicum HOM05D001197 ORTHO05D000124 1.0e-06 57.8 108 30.6
GSVIVG01029394001 Vitis vinifera HOM05D001197 ORTHO05D000124 1.0e-06 57.8 106 30.2
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.3e-06 57.4 105 31.4
MBI08_g09791_MAGBIO Magnolia biondii HOM05D001197 ORTHO05D000124 1.3e-06 57.4 114 30.7
MD06G1236600 Malus domestica HOM05D001197 ORTHO05D000124 1.7e-06 57.0 110 30.9
Lsat_1_v5_gn_2_128500 Lactuca sativa HOM05D003145 ORTHO05D003586 2.3e-06 56.6 97 33.0
Atru.chr6.3242 Acer truncatum HOM05D000142 ORTHO05D000124 3.8e-06 55.8 97 32.0
MELO3C001961.2 Cucumis melo HOM05D001197 ORTHO05D000124 3.8e-06 55.8 98 31.6
Thhalv10019191m.g Eutrema salsugineum HOM05D001197 ORTHO05D000124 5.0e-06 55.5 99 35.4
CSS0018921 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D000124 6.6e-06 55.1 97 32.0
Haze_18990 Corylus avellana HOM05D001197 ORTHO05D000124 6.6e-06 55.1 105 31.4
FAN04G2377 Fragaria x ananassa HOM05D001197 ORTHO05D000124 6.6e-06 55.1 106 32.1
RcHm_v2.0_Chr7g0177501 Rosa chinensis HOM05D001197 ORTHO05D000124 6.6e-06 55.1 106 32.1
BcaB01g05800 Brassica carinata HOM05D000428 ORTHO05D012469 8.6e-06 54.7 79 41.8
C03p01620 Brassica napus HOM05D000428 ORTHO05D012469 8.6e-06 54.7 86 38.4
BolC3t12714H Brassica oleracea HOM05D000428 ORTHO05D012469 8.6e-06 54.7 86 38.4
CDE05G1032 Ceratophyllum demersum HOM05D001197 ORTHO05D000124 8.6e-06 54.7 101 30.7
FvH4_5g18110 Fragaria vesca HOM05D001197 ORTHO05D000124 8.6e-06 54.7 106 31.1
FAN18G0184 Fragaria x ananassa HOM05D001197 ORTHO05D000124 8.6e-06 54.7 106 31.1
Glyma.16G217600 Glycine max HOM05D001197 ORTHO05D000124 8.6e-06 54.7 95 32.6
Phvul.004G143300 Phaseolus vulgaris HOM05D001197 ORTHO05D000124 8.6e-06 54.7 98 31.6


User provided reference genes

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