Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 0.0e+00 1525.4 789 100.0
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 0.0e+00 1234.2 766 86.2
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 0.0e+00 1229.5 781 84.6
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 0.0e+00 1164.1 750 83.3
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 0.0e+00 1163.7 762 82.7
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 0.0e+00 1163.3 771 81.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 0.0e+00 1160.2 781 80.8
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.9e-299 1032.3 703 79.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-274 949.9 620 84.4
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.2e-274 949.9 703 73.7
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 8.6e-268 927.2 787 67.9
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.1e-225 785.8 706 64.9
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.4e-204 717.2 716 60.6
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 2.2e-202 709.9 723 58.9
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.4e-201 706.4 712 60.3
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.6e-197 692.6 719 58.3
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 8.0e-197 691.4 716 58.7
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.0e-195 686.8 711 59.9
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 7.4e-195 684.9 711 58.5
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.5e-192 675.6 712 59.3
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 5.9e-192 675.2 710 58.5
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.5e-190 670.6 709 57.8
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.1e-189 666.8 703 58.6
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 8.0e-189 664.8 716 57.0
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 5.2e-188 662.1 741 55.2
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 5.2e-188 662.1 715 56.5
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 7.5e-187 658.3 710 56.6
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.2e-186 654.8 707 56.4
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.3e-185 652.1 687 57.5
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.5e-183 645.2 711 56.5
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 8.5e-183 644.8 704 56.5
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.6e-181 640.6 710 56.3
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.6e-181 640.6 796 53.0
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.0e-181 638.3 687 56.3
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 2.3e-180 636.7 638 59.2
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.8e-180 634.8 704 55.5
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.6e-179 633.3 710 55.8
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.7e-178 630.6 709 55.0
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-177 627.9 702 55.4
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-177 627.9 687 56.2
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.4e-177 626.7 706 56.4
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 7.0e-177 625.2 712 56.2
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.9e-176 622.1 725 55.7
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.7e-175 620.5 732 53.3
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.1e-174 617.8 766 54.3
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.3e-170 601.7 706 54.5
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 4.1e-169 599.4 703 54.2
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 1.2e-168 597.8 711 53.7
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 6.6e-167 592.0 716 53.5
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.9e-166 590.5 712 53.4
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 7.3e-166 588.6 717 53.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 4.7e-165 585.9 824 47.7
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 8.0e-165 585.1 723 52.1
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 3.1e-164 583.2 720 53.5
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.1e-164 583.2 641 58.3
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 7.5e-163 578.6 711 52.3
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 9.2e-161 571.6 712 52.7
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.0e-159 568.2 709 51.3
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 6.6e-159 565.5 715 52.3
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 5.6e-158 562.4 612 56.9
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.2e-157 561.2 716 51.4
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.1e-157 560.5 708 52.4
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.1e-156 558.1 780 47.3
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.3e-156 557.0 722 51.7
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 2.4e-153 547.0 633 54.8
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 5.4e-153 545.8 721 50.2
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.9e-150 537.3 703 50.6
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 2.5e-150 537.0 711 50.2
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.5e-150 537.0 720 49.3
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 2.1e-149 533.9 710 49.7
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.6e-149 533.1 703 49.5
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.1e-148 531.6 734 50.1
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 5.2e-148 529.3 708 49.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 5.8e-147 525.8 724 48.2
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.9e-146 523.5 700 49.3
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.5e-144 516.5 767 46.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 4.6e-144 516.2 709 48.1
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.0e-144 515.8 694 49.0
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.1e-142 511.5 811 44.1
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 3.1e-140 503.4 731 46.6
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 8.9e-140 501.9 697 48.2
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.5e-139 501.1 711 47.1
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 4.9e-138 496.1 740 45.5
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 9.2e-137 491.9 710 46.1
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 2.1e-136 490.7 522 57.3
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 6.0e-136 489.2 719 47.4
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.8e-136 488.8 707 47.1
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.0e-135 488.4 701 47.8
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.3e-135 487.3 706 46.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.3e-134 483.4 728 45.5
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 7.3e-134 482.3 702 46.3
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.8e-133 480.3 704 47.3
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 3.6e-133 479.9 630 48.6
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 3.6e-133 479.9 703 47.4
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.1e-129 468.4 705 45.1
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.1e-125 454.1 703 46.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 4.8e-125 453.0 773 43.3
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.2e-125 452.6 707 45.8
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 8.1e-125 452.2 658 47.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.1e-124 451.8 699 47.5
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 1.1e-121 441.8 710 43.7
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 4.6e-120 436.4 787 41.4
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.3e-119 434.1 731 43.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 2.3e-119 434.1 708 42.7
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 7.4e-118 429.1 555 49.5
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.2e-115 421.8 778 39.1
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 4.5e-115 419.9 650 43.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.8e-111 407.9 691 41.7
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.9e-111 406.8 634 44.5
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.3e-108 396.4 637 43.2
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 2.0e-107 394.4 625 44.3
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 2.6e-107 394.0 676 42.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.2e-106 391.0 688 41.3
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 4.9e-106 389.8 688 41.3
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 2.1e-104 384.4 676 41.4
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.5e-102 378.3 644 42.7
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.9e-102 377.9 715 39.4
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.6e-101 374.8 711 39.5
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.7e-101 373.6 570 45.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 4.8e-101 373.2 903 36.1
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 9.0e-100 369.0 766 38.4
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.0e-99 367.9 703 40.4
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.6e-99 367.5 711 41.1
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 4.5e-99 366.7 679 40.4
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.7e-98 364.8 683 40.3
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.7e-98 364.8 682 40.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.9e-98 364.0 622 42.8
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.4e-97 361.7 678 39.8
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 3.2e-97 360.5 683 40.0
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.6e-96 357.1 306 63.1
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 2.5e-94 350.9 682 39.4
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 3.3e-94 350.5 870 35.1
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 7.4e-94 349.4 681 38.8
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.8e-93 347.4 682 39.0
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.4e-92 345.1 689 38.3
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 4.1e-92 343.6 714 37.1
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.8e-87 328.2 563 41.4
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.0e-87 327.4 331 60.1
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 3.7e-85 320.5 785 37.1
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.7e-82 311.6 710 37.2
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 8.5e-82 309.3 347 56.2
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.1e-81 308.9 316 57.3
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.0e-79 300.8 352 53.4
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 2.0e-78 298.1 565 38.9
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.2e-77 294.7 306 55.6
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 6.3e-77 293.1 319 53.0
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.0e-71 275.8 435 46.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 9.7e-70 269.2 461 42.1
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 6.3e-69 266.5 220 65.0
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 3.5e-67 260.8 623 36.9
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.9e-67 260.0 640 36.9
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 8.0e-64 249.6 492 42.1
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 5.7e-62 243.4 589 33.6
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 3.1e-60 237.7 382 40.8
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.1e-48 198.4 142 73.9
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.9e-45 188.0 139 68.3
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 8.3e-45 186.4 464 37.1
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-42 177.6 267 47.9
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.6e-38 164.9 103 80.6
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.2e-35 156.0 294 40.1
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.6e-35 155.6 385 37.1
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 3.5e-35 154.5 384 36.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.6e-32 144.4 117 64.1
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 4.0e-31 141.0 207 43.5
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 8.9e-31 139.8 456 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 6.0e-27 127.1 494 28.9
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.9e-25 122.1 479 33.0
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.3e-25 121.3 98 67.3
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 9.9e-22 109.8 84 71.4
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.0e-19 100.5 109 53.2
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 4.0e-15 87.8 340 33.8
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.4e-12 77.4 66 65.2
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.7e-11 75.1 56 67.9
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.0e-11 73.9 63 57.1
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.3e-10 72.8 96 45.8
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.7e-10 72.4 67 59.7
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.0e-10 71.6 55 70.9
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 5.1e-10 70.9 198 34.8
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 8.7e-10 70.1 207 37.2
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.1e-08 65.5 186 35.5


User provided reference genes

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