Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.8e-27 125.2 64 100.0
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 3.6e-23 110.9 64 84.4
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 8.9e-22 106.3 58 89.7
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 3.0e-17 91.3 57 77.2
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 6.6e-17 90.1 61 73.8
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 6.6e-17 90.1 57 77.2
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 1.1e-16 89.4 58 74.1
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.5e-16 89.0 61 73.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 1.9e-16 88.6 63 69.8
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 3.3e-16 87.8 58 74.1
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 3.3e-16 87.8 61 72.1
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.3e-16 87.4 48 85.4
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.3e-16 87.4 48 85.4
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 4.3e-16 87.4 61 72.1
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.2e-15 85.9 48 83.3
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.2e-15 85.9 55 72.7
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 1.6e-15 85.5 63 66.7
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 1.6e-15 85.5 54 74.1
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 2.1e-15 85.1 48 83.3
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 3.6e-15 84.3 62 71.0
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 3.6e-15 84.3 48 83.3
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 6.2e-15 83.6 63 65.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 8.0e-15 83.2 48 81.2
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 8.0e-15 83.2 48 81.2
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 8.0e-15 83.2 49 79.6
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.0e-14 82.8 50 76.0
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 3.1e-14 81.3 63 68.3
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 3.1e-14 81.3 55 67.3
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 6.8e-14 80.1 55 69.1
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 6.8e-14 80.1 56 69.6
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 8.9e-14 79.7 55 70.9
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 8.9e-14 79.7 61 67.2
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 1.5e-13 79.0 62 64.5
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 2.0e-13 78.6 51 72.5
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.0e-13 78.6 50 74.0
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 7.5e-13 76.6 61 60.7
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 7.5e-13 76.6 51 70.6
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 9.8e-13 76.3 58 67.2
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.3e-12 75.9 40 85.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.3e-12 75.9 40 85.0
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.3e-12 75.9 53 66.0
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 2.2e-12 75.1 47 72.3
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 2.9e-12 74.7 58 63.8
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.9e-11 72.0 53 62.3
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 2.4e-11 71.6 47 68.1
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 3.2e-11 71.2 54 61.1
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 3.2e-11 71.2 55 61.8
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 3.2e-11 71.2 45 68.9
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 7.0e-11 70.1 55 60.0
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 7.0e-11 70.1 45 71.1
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 9.2e-11 69.7 50 64.0
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 1.6e-10 68.9 52 67.3
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 3.5e-10 67.8 45 64.4
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 4.6e-10 67.4 58 56.9
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 4.6e-10 67.4 58 56.9
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 1.0e-09 66.2 44 68.2
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.3e-09 65.9 54 57.4
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 8.6e-09 63.2 44 65.9
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 1.9e-08 62.0 56 55.4
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 3.3e-08 61.2 35 77.1
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 7.3e-08 60.1 39 66.7
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 9.5e-08 59.7 46 67.4
Ah.05g180620 Amaranthus hybridus HOM05D011433 ORTHO05D013366 8.1e-07 56.6 59 49.2
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 1.1e-06 56.2 56 51.8


User provided reference genes

Program Settings