Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 0.0e+00 1096.3 581 100.0
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 4.7e-255 884.4 544 86.6
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.8e-253 877.5 551 85.5
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.3e-252 873.6 548 85.6
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.4e-251 872.1 548 85.2
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.1e-251 871.3 548 85.0
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.0e-250 869.0 548 84.9
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.7e-249 865.9 565 83.0
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 3.3e-232 808.5 543 81.2
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.5e-155 553.1 547 57.8
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 6.8e-153 545.0 543 57.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.2e-149 534.3 543 56.4
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 5.0e-148 528.9 548 54.7
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.8e-146 523.1 547 55.0
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.8e-146 523.1 547 54.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.4e-145 520.8 535 53.8
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.9e-143 513.1 547 51.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 8.3e-143 511.5 572 52.3
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.1e-142 509.2 552 52.0
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 7.0e-142 508.4 550 51.3
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.0e-140 504.6 548 52.6
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 3.9e-140 502.7 549 51.5
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.6e-140 501.5 550 50.7
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 2.5e-139 500.0 550 51.6
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 9.5e-139 498.0 547 51.2
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.2e-138 497.7 548 52.0
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.6e-138 497.3 548 51.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 6.2e-138 495.4 551 49.9
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.8e-137 493.8 570 49.1
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.0e-136 490.3 546 50.5
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.4e-136 489.2 546 49.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.6e-133 480.7 542 50.9
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 4.6e-133 479.2 564 49.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 4.1e-126 456.1 530 48.1
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 2.1e-125 453.8 580 46.2
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.7e-125 453.4 552 47.6
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.6e-125 452.6 535 49.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 4.6e-125 452.6 551 47.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 4.6e-125 452.6 551 48.3
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-124 451.1 555 47.7
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.3e-124 451.1 547 47.7
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.9e-124 449.5 546 49.8
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 5.1e-124 449.1 551 47.4
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 5.1e-124 449.1 551 47.7
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 5.6e-123 445.7 551 48.5
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 4.0e-121 439.5 548 48.0
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.2e-120 438.0 550 46.9
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 7.6e-120 435.3 549 45.9
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 8.4e-119 431.8 549 45.9
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 4.2e-118 429.5 626 43.0
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 7.1e-118 428.7 549 46.3
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.2e-117 427.9 591 44.8
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.0e-116 424.9 553 46.5
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.7e-116 424.1 549 47.2
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 4.3e-115 419.5 507 48.7
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 6.2e-114 415.6 556 44.4
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 8.1e-114 415.2 546 44.0
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 6.9e-113 412.1 546 45.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.2e-112 411.4 550 45.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 2.6e-112 410.2 550 46.5
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 3.4e-112 409.8 453 50.8
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.4e-112 409.8 549 43.5
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 4.4e-112 409.5 587 45.1
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 9.9e-112 408.3 553 43.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.3e-111 407.9 552 42.9
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 8.4e-111 405.2 544 44.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.5e-109 399.8 552 43.5
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 7.8e-109 398.7 551 43.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 2.3e-108 397.1 550 43.6
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.6e-108 395.6 548 43.1
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 6.6e-108 395.6 551 43.6
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-107 393.7 545 43.3
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.5e-107 393.7 553 43.9
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 4.3e-107 392.9 551 43.9
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 5.6e-107 392.5 548 42.9
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 5.6e-107 392.5 548 42.9
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 7.3e-107 392.1 548 42.9
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 9.6e-107 391.7 548 42.9
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.3e-106 391.3 548 42.9
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.3e-106 391.3 548 42.7
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.8e-106 390.2 549 42.4
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.8e-105 387.5 507 46.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 6.9e-105 385.6 553 43.8
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.0e-105 385.2 553 42.1
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.3e-103 381.3 550 42.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.8e-103 379.8 549 42.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 4.9e-103 379.4 548 41.6
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.9e-102 377.5 457 48.4
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 5.4e-102 375.9 555 42.0
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.2e-101 374.8 549 41.9
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.1e-101 374.0 544 42.3
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 6.0e-101 372.5 545 41.8
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.0e-100 371.7 545 42.4
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.3e-100 371.3 547 41.7
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 5.1e-100 369.4 561 42.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.5e-99 367.9 570 40.7
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.9e-99 367.5 555 41.3
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.1e-98 364.0 546 41.6
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 5.3e-97 359.4 551 41.6
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.7e-95 354.4 696 37.2
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.2e-95 354.0 548 41.8
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.8e-95 353.2 435 45.3
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 5.1e-92 342.8 547 39.7
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.4e-89 334.7 530 40.0
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 4.0e-89 333.2 403 48.4
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.2e-87 327.4 404 48.8
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 7.1e-86 322.4 554 39.2
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.0e-84 317.0 545 38.9
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.1e-83 315.1 571 39.4
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 2.9e-79 300.4 574 35.4
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 7.2e-78 295.8 570 34.9
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.2e-77 295.0 563 35.7
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.3e-74 285.0 588 36.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.8e-74 283.9 352 47.4
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.8e-73 281.2 547 36.0
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.1e-73 278.9 481 38.3
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 5.0e-71 273.1 297 54.2
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-70 271.6 426 41.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 9.4e-70 268.9 357 45.1
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 6.1e-69 266.2 294 53.7
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.3e-66 258.5 547 34.9
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.3e-59 233.8 368 40.8
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.3e-55 221.9 498 34.5
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.7e-55 221.5 296 48.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.0e-51 208.0 452 32.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.0e-47 195.7 238 48.7
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.9e-47 194.1 288 41.0
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.8e-47 193.7 359 37.3
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 8.0e-37 159.5 291 36.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.0e-31 142.5 143 49.7
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 1.3e-31 142.1 362 32.6
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.6e-31 139.8 167 45.5
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.6e-29 135.2 144 49.3
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 5.2e-28 130.2 158 43.0
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 8.9e-28 129.4 158 43.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 8.3e-26 122.9 153 42.5
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 1.4e-25 122.1 203 38.4
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.9e-25 121.7 237 35.0
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 7.0e-25 119.8 150 44.7
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.0e-24 118.2 659 22.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.7e-24 117.9 176 40.9
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 9.5e-22 109.4 495 24.8
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.6e-21 108.6 209 29.7
RcHm_v2.0_Chr1g0346601 Rosa chinensis HOM05D004671 ORTHO05D005638 1.6e-21 108.6 60 95.0
RcHm_v2.0_Chr2g0108991 Rosa chinensis HOM05D004671 ORTHO05D005638 1.2e-19 102.4 60 91.7
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 9.2e-17 92.8 249 30.9
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 2.5e-14 84.7 132 34.8
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 3.1e-12 77.8 171 30.4
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 8.3e-10 69.7 290 23.8
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 3.2e-09 67.8 88 50.0
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 5.6e-06 57.0 84 42.9


User provided reference genes

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