Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376981 Rosa chinensis HOM05D007270 ORTHO05D009126 2.3e-54 215.3 108 100.0
FAN01G3083 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.0e-46 189.9 108 88.0
FAN10G3505 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.3e-46 189.5 108 88.0
FAN03G3015 Fragaria x ananassa HOM05D007270 ORTHO05D009126 3.0e-46 188.3 109 86.2
FAN03G0438 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.9e-45 185.7 105 87.6
FAN06G1959 Fragaria x ananassa HOM05D007270 ORTHO05D009126 4.3e-45 184.5 108 84.3
FAN06G2673 Fragaria x ananassa HOM05D007270 ORTHO05D009126 4.3e-45 184.5 108 84.3
FvH4_7g29230 Fragaria vesca HOM05D007270 ORTHO05D009126 9.6e-45 183.3 108 83.3
Prupe.2G292300 Prunus persica HOM05D007270 ORTHO05D009126 1.5e-26 122.9 110 66.4
MD07G1266700 Malus domestica HOM05D007270 ORTHO05D009126 3.1e-19 98.6 111 52.3
MD01G1198900 Malus domestica HOM05D007270 ORTHO05D009126 1.2e-18 96.7 103 56.3
Sed0022823 Sechium edule HOM05D007270 ORTHO05D009126 3.4e-18 95.1 113 53.1
CsaV3_3G016970 Cucumis sativus L. HOM05D007270 ORTHO05D009126 4.5e-18 94.7 115 49.6
Phvul.004G119400 Phaseolus vulgaris HOM05D007270 ORTHO05D009126 2.9e-17 92.0 110 50.0
Sed0026018 Sechium edule HOM05D007270 ORTHO05D009126 5.0e-17 91.3 112 51.8
Dinv35199 Davidia involucrata HOM05D007270 ORTHO05D009126 1.1e-16 90.1 88 52.3
Manes.14G027400 Manihot esculenta HOM05D007270 ORTHO05D009126 1.1e-16 90.1 106 53.8
VMungo0464G2153 Vigna mungo HOM05D007270 ORTHO05D009126 1.1e-16 90.1 105 51.4
Ciclev10006265m.g Citrus clementina HOM05D007270 ORTHO05D009126 1.4e-16 89.7 98 54.1
Hma1.2p1_2094F.1_g313960 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 1.9e-16 89.4 90 58.9
Haze_13735 Corylus avellana HOM05D007270 ORTHO05D009126 2.5e-16 89.0 133 45.9
Hma1.2p1_0270F.1_g108240 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 3.2e-16 88.6 91 50.5
Glyma.16G196000 Glycine max HOM05D007270 ORTHO05D009126 1.2e-15 86.7 99 52.5
Lj2g0001956 Lotus japonicus HOM05D007270 ORTHO05D009126 2.1e-15 85.9 112 53.6
Medtr0022s0200 Medicago truncatula HOM05D007270 ORTHO05D009126 3.6e-15 85.1 108 49.1
Dinv28460 Davidia involucrata HOM05D007270 ORTHO05D009126 6.1e-15 84.3 89 53.9
Psat0ss2830g0200 Pisum sativum HOM05D007270 ORTHO05D009126 1.0e-14 83.6 107 48.6
SalBow4G1292 Salvia bowleyana HOM05D007270 ORTHO05D009126 3.9e-14 81.6 94 50.0
SalBow4G1320 Salvia bowleyana HOM05D007270 ORTHO05D009126 3.9e-14 81.6 94 50.0
Glyma.09G143000 Glycine max HOM05D007270 ORTHO05D009126 5.2e-14 81.3 114 49.1
Actinidia03115 Actinidia chinensis HOM05D007270 ORTHO05D009126 8.8e-14 80.5 110 45.5
ClCG05G007940 Citrullus lanatus HOM05D007270 ORTHO05D009126 8.8e-14 80.5 83 51.8
Thecc.03G173300 Theobroma cacao HOM05D007270 ORTHO05D009126 8.8e-14 80.5 122 49.2
Duzib084G1249 Durio zibethinus HOM05D007270 ORTHO05D009126 2.0e-13 79.3 110 48.2
Oeu061638.1 Olea europaea HOM05D007270 ORTHO05D009126 2.0e-13 79.3 88 52.3
MELO3C006894.2 Cucumis melo HOM05D007270 ORTHO05D009126 3.3e-13 78.6 112 44.6
Gorai.004G119700 Gossypium raimondii HOM05D007270 ORTHO05D009126 3.3e-13 78.6 113 47.8
Potri.015G140800 Populus trichocarpa HOM05D007270 ORTHO05D009126 3.3e-13 78.6 101 48.5
Gohir.A08G100400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 5.7e-13 77.8 118 46.6
Gohir.D08G111600 Gossypium hirsutum HOM05D007270 ORTHO05D009126 5.7e-13 77.8 118 46.6
QL09p014589 Quercus lobata HOM05D007270 ORTHO05D009126 5.7e-13 77.8 112 45.5
TWI23G0245 Tripterygium wilfordii HOM05D007270 ORTHO05D009126 9.7e-13 77.0 104 49.0
Sabra12G0104200 Salix brachista HOM05D007270 ORTHO05D009126 1.7e-12 76.3 97 47.4
TWI39G0237 Tripterygium wilfordii HOM05D007270 ORTHO05D009126 1.7e-12 76.3 98 48.0
Duzib205G1728 Durio zibethinus HOM05D007270 ORTHO05D009126 2.8e-12 75.5 107 47.7
TPR.G10771 Trifolium pratense HOM05D007270 ORTHO05D009126 2.8e-12 75.5 108 46.3
COL.COLO4_14286 Corchorus olitorius HOM05D007270 ORTHO05D009126 3.7e-12 75.1 125 42.4
Duzib068G0291 Durio zibethinus HOM05D007270 ORTHO05D009126 3.7e-12 75.1 110 47.3
Migut.F00356 Erythranthe guttata HOM05D007270 ORTHO05D009126 4.8e-12 74.7 91 46.2
Rhsim09G0197400 Rhododendron simsii HOM05D007270 ORTHO05D009126 6.3e-12 74.3 110 43.6
TAR375G1025 Trochodendron aralioides HOM05D007270 ORTHO05D009126 1.1e-11 73.6 103 44.7
arahy.Tifrunner.gnm1.ann1.Y59FV0 Arachis hypogaea HOM05D007270 ORTHO05D009126 1.4e-11 73.2 125 40.0
Lalb_Chr06g0161061 Lupinus albus HOM05D007270 ORTHO05D009126 1.4e-11 73.2 97 49.5
Solyc03g026000.4 Solanum lycopersicum HOM05D007270 ORTHO05D009126 1.4e-11 73.2 96 44.8
Sopen03g004830 Solanum pennellii HOM05D007270 ORTHO05D009126 1.4e-11 73.2 96 44.8
MSTRG.8447 Avicennia marina HOM05D007270 ORTHO05D009126 3.1e-11 72.0 93 45.2
PGR142G1670 Punica granatum HOM05D007270 ORTHO05D009126 3.1e-11 72.0 94 45.7
PGSC0003DMG400014284 Solanum tuberosum HOM05D007270 ORTHO05D009126 3.1e-11 72.0 95 44.2
MSTRG.27125 Avicennia marina HOM05D007270 ORTHO05D009126 4.1e-11 71.6 94 48.9
Gohir.D09G041400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 4.1e-11 71.6 111 46.8
Gorai.006G047600 Gossypium raimondii HOM05D007270 ORTHO05D009126 4.1e-11 71.6 112 46.4
Cfa008302 Carpinus fangiana HOM05D007270 ORTHO05D009126 1.2e-10 70.1 88 50.0
Hma1.2p1_1323F.1_g275600 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 1.6e-10 69.7 48 68.8
Nitab4.5_0000716g0240 Nicotiana tabacum HOM05D007270 ORTHO05D009126 1.6e-10 69.7 99 39.4
CDE11G1162 Ceratophyllum demersum HOM05D007270 ORTHO05D009126 2.6e-10 68.9 102 41.2
CDE02G2351 Ceratophyllum demersum HOM05D007270 ORTHO05D009126 5.9e-10 67.8 97 42.3
Peaxi162Scf00915g00024 Petunia axillaris HOM05D007270 ORTHO05D009126 7.7e-10 67.4 96 42.7
arahy.Tifrunner.gnm1.ann1.89K6QE Arachis hypogaea HOM05D007270 ORTHO05D009126 1.0e-09 67.0 101 47.5
CANSAT21G0701 Cannabis sativa HOM05D007270 ORTHO05D009126 1.3e-09 66.6 105 43.8
Nn1g01405 Nelumbo nucifera HOM05D007270 ORTHO05D009126 1.3e-09 66.6 117 42.7
Nitab4.5_0001508g0050 Nicotiana tabacum HOM05D007270 ORTHO05D009126 2.2e-09 65.9 99 42.4
Gohir.A09G040765 Gossypium hirsutum HOM05D007270 ORTHO05D009126 2.9e-09 65.5 58 60.3
TAR374G0261 Trochodendron aralioides HOM05D007270 ORTHO05D009126 2.9e-09 65.5 107 44.9
Glyma.10G237600 Glycine max HOM05D007270 ORTHO05D009126 3.8e-09 65.1 76 47.4
EL10Ac3g05666 Beta vulgaris HOM05D007270 ORTHO05D009126 8.5e-09 63.9 114 38.6
Eucgr.K00240 Eucalyptus grandis HOM05D007270 ORTHO05D009126 8.5e-09 63.9 119 39.5
Atru.chr1.483 Acer truncatum HOM05D007270 ORTHO05D009126 1.1e-08 63.5 107 42.1
DCAR_018187 Daucus carota HOM05D007270 ORTHO05D009126 1.1e-08 63.5 92 44.6
MBI04_g04728_MAGBIO Magnolia biondii HOM05D007270 ORTHO05D009126 1.5e-08 63.2 86 40.7
Lsat_1_v5_gn_0_29881 Lactuca sativa HOM05D007270 ORTHO05D009126 1.9e-08 62.8 92 40.2
LjContig00238g0018696 Lotus japonicus HOM05D007270 ORTHO05D009126 2.5e-08 62.4 106 43.4
GSVIVG01010593001 Vitis vinifera HOM05D007270 ORTHO05D009126 2.5e-08 62.4 82 54.9
PSO478G4124 Papaver somniferum HOM05D007270 ORTHO05D009126 7.2e-08 60.8 134 36.6
Cc02_g03180 Coffea canephora HOM05D007270 ORTHO05D009126 9.4e-08 60.5 102 39.2
Lsat_1_v5_gn_0_29801 Lactuca sativa HOM05D007270 ORTHO05D009126 9.4e-08 60.5 100 37.0
CiPaw.03G104500 Carya illinoinensis HOM05D007270 ORTHO05D009126 1.2e-07 60.1 88 47.7
Glyma.20G157001 Glycine max HOM05D007270 ORTHO05D009126 1.2e-07 60.1 79 44.3
MBI12_g14428_MAGBIO Magnolia biondii HOM05D007270 ORTHO05D009126 1.2e-07 60.1 119 39.5
MBI12_g15032_MAGBIO Magnolia biondii HOM05D007270 ORTHO05D009126 1.2e-07 60.1 119 39.5
Gohir.D12G260400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 1.6e-07 59.7 101 39.6
Gorai.008G279000 Gossypium raimondii HOM05D007270 ORTHO05D009126 1.6e-07 59.7 101 39.6
Gohir.A12G259600 Gossypium hirsutum HOM05D007270 ORTHO05D009126 2.1e-07 59.3 101 39.6
VMungo0481G0001 Vigna mungo HOM05D007270 ORTHO05D009126 2.7e-07 58.9 102 38.2
arahy.Tifrunner.gnm1.ann1.LNQ50U Arachis hypogaea HOM05D007270 ORTHO05D009126 6.1e-07 57.8 67 47.8
PSO782G1298 Papaver somniferum HOM05D007270 ORTHO05D009126 8.0e-07 57.4 137 36.5
Phvul.007G068000 Phaseolus vulgaris HOM05D007270 ORTHO05D009126 8.0e-07 57.4 65 47.7
Eucgr.A02802 Eucalyptus grandis HOM05D007270 ORTHO05D009126 1.0e-06 57.0 119 33.6
ECA232G2863 Erigeron canadensis HOM05D007270 ORTHO05D009126 1.4e-06 56.6 95 41.1
Lsat_1_v5_gn_0_29861 Lactuca sativa HOM05D007270 ORTHO05D009126 1.4e-06 56.6 100 37.0
Aqoxy7G00397 Aquilegia oxysepala HOM05D007270 ORTHO05D009126 4.0e-06 55.1 116 34.5
HanXRQChr09g0253491 Helianthus annuus HOM05D007270 ORTHO05D009126 6.7e-06 54.3 97 41.2


User provided reference genes

Program Settings