Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 3.0e-249 864.8 453 100.0
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.4e-207 724.2 461 83.1
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.1e-201 706.8 463 81.2
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.4e-201 706.4 454 82.2
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.8e-201 704.1 463 80.8
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 3.1e-193 678.7 458 77.9
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 4.9e-191 671.4 427 83.4
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 1.1e-185 653.7 460 72.8
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 6.5e-151 538.1 471 59.9
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 7.1e-150 534.6 471 60.5
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.1e-149 533.1 468 60.5
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 2.2e-146 523.1 466 60.3
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 8.2e-146 521.2 460 60.0
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 3.8e-143 512.3 475 58.3
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 1.2e-141 507.3 470 58.3
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 3.6e-141 505.8 474 58.0
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.6e-141 505.4 467 57.2
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.7e-135 486.9 472 55.9
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 3.8e-135 485.7 462 55.6
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 1.4e-134 483.8 471 56.1
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 2.5e-134 483.0 467 57.4
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 3.2e-134 482.6 472 55.5
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 4.7e-133 478.8 478 55.2
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 6.1e-133 478.4 455 57.4
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.4e-132 477.2 458 56.1
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 6.7e-132 474.9 458 55.9
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 4.4e-131 472.2 463 56.6
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 5.7e-131 471.9 466 55.2
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 1.7e-130 470.3 466 55.4
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.2e-130 469.9 466 55.6
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 4.8e-130 468.8 458 53.9
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 8.2e-130 468.0 461 56.0
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 8.2e-130 468.0 461 56.4
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 3.1e-129 466.1 464 55.4
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 4.1e-129 465.7 464 53.9
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.2e-128 464.2 324 78.4
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 2.6e-128 463.0 457 53.4
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 3.4e-128 462.6 457 54.0
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 3.4e-128 462.6 457 54.0
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 3.4e-128 462.6 457 54.0
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 3.4e-128 462.6 464 57.1
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 2.2e-127 459.9 469 52.0
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 2.2e-127 459.9 465 53.1
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 2.9e-127 459.5 458 53.3
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 8.5e-127 458.0 457 53.6
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 1.4e-126 457.2 457 53.4
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.4e-126 457.2 460 53.3
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 1.4e-126 457.2 458 52.8
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 4.2e-126 455.7 464 52.2
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 4.2e-126 455.7 465 55.7
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 7.2e-126 454.9 461 52.1
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 3.9e-124 449.1 456 53.1
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 5.2e-124 448.7 466 52.4
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 6.7e-124 448.4 475 52.4
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 8.8e-124 448.0 467 52.5
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 1.1e-123 447.6 413 56.7
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.3e-122 444.1 460 51.5
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 4.1e-121 439.1 454 51.8
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 4.1e-121 439.1 462 52.2
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 5.3e-121 438.7 462 48.9
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.3e-119 434.1 465 49.7
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 5.0e-119 432.2 461 50.1
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 5.0e-119 432.2 451 51.7
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 1.5e-118 430.6 447 53.5
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 1.9e-118 430.3 461 50.3
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 5.2e-116 422.2 457 49.9
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 1.5e-115 420.6 438 52.3
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 2.6e-115 419.9 455 50.1
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 5.7e-115 418.7 457 49.5
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 2.2e-114 416.8 460 50.7
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 4.8e-114 415.6 442 52.5
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 3.1e-113 412.9 452 49.3
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 7.0e-113 411.8 470 47.4
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 2.2e-111 406.8 356 57.9
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 2.9e-111 406.4 413 53.8
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 2.1e-109 400.2 399 54.6
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.4e-108 397.5 408 53.9
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 9.8e-107 391.3 402 54.0
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 1.7e-106 390.6 460 46.7
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 2.2e-106 390.2 401 54.4
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 1.1e-102 377.9 425 50.6
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 3.3e-102 376.3 410 50.2
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.2e-101 374.4 460 45.4
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 9.2e-97 358.2 406 51.0
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.2e-96 357.8 369 53.4
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 1.0e-95 354.8 455 42.9
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.3e-87 327.8 351 52.7
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 5.6e-86 322.4 464 44.6
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 2.1e-77 293.9 228 61.4
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.1e-76 291.6 594 32.7
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.2e-76 289.3 228 58.8
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 2.9e-74 283.5 434 40.8
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 5.4e-73 279.3 265 59.2
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 6.8e-68 262.3 455 39.8
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.0e-63 248.4 442 40.3
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 2.9e-58 230.3 251 49.4
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 6.4e-58 229.2 526 31.9
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 2.6e-51 207.2 142 70.4
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 4.0e-44 183.3 458 29.0
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 4.2e-41 173.3 428 33.2
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.1e-39 166.4 307 35.8
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 2.4e-36 157.5 503 24.7
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 2.2e-34 151.0 227 45.8
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 3.8e-34 150.2 115 62.6
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 2.5e-33 147.5 427 31.1
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.4e-28 131.7 166 45.2
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 7.7e-27 125.9 252 38.1
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 1.4e-20 105.1 111 60.4
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 1.8e-20 104.8 177 42.4
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 5.3e-20 103.2 135 50.4
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 3.4e-19 100.5 145 43.4
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 3.8e-18 97.1 97 54.6
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 7.4e-14 82.8 114 39.5
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 5.9e-11 73.2 112 44.6
VMungo0331G1316 Vigna mungo HOM05D006594 ORTHO05D008383 4.4e-06 57.0 44 61.4
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 7.4e-06 56.2 121 27.3


User provided reference genes

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