Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.9e-50 202.2 104 100.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.0e-35 151.8 98 76.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 8.7e-35 150.2 98 75.5
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.2e-23 113.2 101 58.4
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 5.0e-22 107.8 102 57.8
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 6.5e-22 107.5 101 56.4
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.9e-21 105.9 102 59.8
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.9e-21 105.9 100 58.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 3.2e-21 105.1 102 56.9
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 7.2e-21 104.0 54 77.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 9.3e-21 103.6 98 58.2
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 9.3e-21 103.6 84 61.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.6e-20 102.8 99 54.5
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.1e-20 102.4 104 54.8
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 6.1e-20 100.9 98 49.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.1e-20 100.9 91 56.0
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.0e-19 100.1 99 50.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.0e-19 100.1 98 53.1
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.3e-19 99.8 92 57.6
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.3e-19 99.8 84 59.5
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.8e-19 99.4 99 52.5
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.8e-19 99.4 98 52.0
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.8e-19 99.4 100 53.0
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.8e-19 99.4 100 52.0
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 2.3e-19 99.0 103 50.5
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 2.3e-19 99.0 99 50.5
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.3e-19 99.0 102 53.9
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 2.3e-19 99.0 98 53.1
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 3.9e-19 98.2 99 50.5
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.9e-19 98.2 99 52.5
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 5.1e-19 97.8 92 52.2
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 5.1e-19 97.8 94 52.1
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.7e-19 97.4 87 56.3
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 8.7e-19 97.1 105 51.4
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.1e-18 96.7 91 49.5
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 89 56.2
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.1e-18 96.7 102 54.9
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.1e-18 96.7 99 48.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.3e-18 95.1 100 54.0
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.3e-18 95.1 100 56.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.3e-18 95.1 100 56.0
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 4.3e-18 94.7 98 49.0
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 4.3e-18 94.7 104 47.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 5.7e-18 94.4 92 50.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.4e-18 94.0 100 55.0
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 9.7e-18 93.6 97 52.6
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 9.7e-18 93.6 86 58.1
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.6e-17 92.8 70 62.9
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 2.2e-17 92.4 99 48.5
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.2e-17 92.4 98 46.9
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.2e-17 92.4 98 46.9
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.2e-17 92.4 98 46.9
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.2e-17 92.4 61 67.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 3.7e-17 91.7 97 52.6
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 4.8e-17 91.3 100 45.0
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 4.8e-17 91.3 86 52.3
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 8.2e-17 90.5 93 49.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.1e-16 90.1 98 53.1
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.8e-16 89.4 98 44.9
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.4e-16 89.0 84 51.2
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.4e-16 89.0 100 51.0
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 4.1e-16 88.2 97 51.5
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 5.3e-16 87.8 83 50.6
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 6.9e-16 87.4 97 43.3
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 6.9e-16 87.4 77 51.9
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 1.2e-15 86.7 101 49.5
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-15 86.3 95 46.3
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.0e-15 85.9 90 47.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 2.0e-15 85.9 91 45.1
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.0e-15 85.9 85 49.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 2.0e-15 85.9 95 45.3
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.6e-15 85.5 85 48.2
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 2.6e-15 85.5 87 48.3
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.6e-15 85.5 85 50.6
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.4e-15 85.1 85 49.4
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.4e-15 85.1 81 51.9
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.5e-15 84.7 76 51.3
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 4.5e-15 84.7 64 56.2
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 4.5e-15 84.7 98 46.9
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 4.5e-15 84.7 86 47.7
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 5.9e-15 84.3 94 48.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 5.9e-15 84.3 98 45.9
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.9e-15 84.3 92 46.7
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 5.9e-15 84.3 88 48.9
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 7.7e-15 84.0 106 45.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 7.7e-15 84.0 103 44.7
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.0e-14 83.6 72 55.6
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.2e-14 82.4 101 49.5
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 5.0e-14 81.3 83 48.2
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 5.0e-14 81.3 94 48.9
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.0e-14 81.3 98 43.9
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 6.5e-14 80.9 67 50.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 6.5e-14 80.9 93 40.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 8.5e-14 80.5 99 46.5
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.4e-13 79.7 98 44.9
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.4e-13 79.7 93 39.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.4e-13 79.7 93 39.8
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.4e-13 79.7 93 44.1
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.4e-13 79.7 93 39.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.4e-13 79.7 93 44.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.4e-13 79.7 94 43.6
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.2e-13 78.6 90 43.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.2e-13 78.2 92 41.3
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 7.2e-13 77.4 104 41.3
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 7.2e-13 77.4 97 42.3
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 9.4e-13 77.0 90 42.2
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.2e-12 76.6 64 53.1
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.1e-12 75.9 82 46.3
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.7e-12 75.5 96 42.7
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 4.6e-12 74.7 83 44.6
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 6.1e-12 74.3 98 42.9
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 6.1e-12 74.3 91 47.3
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.9e-12 73.9 98 41.8
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.9e-12 73.9 87 43.7
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.0e-11 73.6 98 41.8
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.3e-11 72.4 84 44.0
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.9e-11 71.6 98 40.8
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 8.8e-11 70.5 66 47.0
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-10 70.1 76 47.4
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.1e-10 70.1 76 47.4
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.1e-10 70.1 86 40.7
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-10 70.1 96 40.6
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.1e-10 70.1 81 40.7
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.5e-10 68.9 84 47.6
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.5e-10 68.9 93 41.9
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-10 68.6 92 42.4
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 3.3e-10 68.6 92 42.4
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 5.7e-10 67.8 92 41.3
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 7.4e-10 67.4 76 40.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.4e-10 67.4 93 43.0
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.2e-09 65.9 93 43.0
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.7e-09 65.1 86 40.7
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.8e-08 62.8 73 42.5
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 1.5e-07 59.7 88 39.8


User provided reference genes

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