Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376731 Rosa chinensis HOM05D005936 ORTHO05D007967 7.5e-192 673.7 347 100.0
FAN03G0200 Fragaria x ananassa HOM05D005936 ORTHO05D007967 2.6e-152 542.3 294 95.9
FAN03G0500 Fragaria x ananassa HOM05D005936 ORTHO05D007967 4.5e-152 541.6 294 95.6
FvH4_7g29020 Fragaria vesca HOM05D005936 ORTHO05D007967 1.7e-151 539.7 295 95.9
FAN06G1408 Fragaria x ananassa HOM05D005936 ORTHO05D007967 1.7e-151 539.7 295 95.9
FAN06G0122 Fragaria x ananassa HOM05D005936 ORTHO05D007967 8.4e-151 537.3 295 95.6
MD07G1264500 Malus domestica HOM05D005936 ORTHO05D007967 2.7e-141 505.8 301 87.4
Prupe.2G290400 Prunus persica HOM05D005936 ORTHO05D007967 6.7e-140 501.1 301 87.0
Cfa008280 Carpinus fangiana HOM05D005936 ORTHO05D007967 6.5e-135 484.6 300 83.3
CANSAT21G0538 Cannabis sativa HOM05D005936 ORTHO05D007967 5.5e-134 481.5 302 83.4
Thecc.03G170800 Theobroma cacao HOM05D005936 ORTHO05D007967 9.4e-134 480.7 300 81.7
QL09p014981 Quercus lobata HOM05D005936 ORTHO05D007967 2.1e-133 479.6 300 82.7
CSS0027176 Camellia sinensis var. sinensis HOM05D005936 ORTHO05D007967 3.6e-133 478.8 300 83.0
CSS0048625 Camellia sinensis var. sinensis HOM05D005936 ORTHO05D007967 3.6e-133 478.8 300 83.0
CiPaw.04G067400 Carya illinoinensis HOM05D005936 ORTHO05D007967 3.6e-133 478.8 300 83.3
CANSAT21G1747 Cannabis sativa HOM05D005936 ORTHO05D007967 1.4e-132 476.9 300 83.3
Gohir.D09G040700 Gossypium hirsutum HOM05D005936 ORTHO05D007967 1.4e-132 476.9 300 82.0
Gorai.006G046600 Gossypium raimondii HOM05D005936 ORTHO05D007967 1.4e-132 476.9 300 82.0
Duzib084G0661 Durio zibethinus HOM05D005936 ORTHO05D007967 1.8e-132 476.5 300 82.7
Gohir.A09G039900 Gossypium hirsutum HOM05D005936 ORTHO05D007967 4.8e-130 468.4 300 80.7
Nitab4.5_0005024g0030 Nicotiana tabacum HOM05D005936 ORTHO05D007967 4.8e-130 468.4 305 79.7
ClCG05G007820 Citrullus lanatus HOM05D005936 ORTHO05D007967 2.4e-129 466.1 300 80.7
CsaV3_3G016820 Cucumis sativus L. HOM05D005936 ORTHO05D007967 2.4e-129 466.1 300 80.7
Oeu021758.1 Olea europaea HOM05D005936 ORTHO05D007967 2.4e-129 466.1 303 79.9
DCAR_018171 Daucus carota HOM05D005936 ORTHO05D007967 3.1e-129 465.7 300 79.7
Hma1.2p1_0270F.1_g108440 Hydrangea macrophylla HOM05D005936 ORTHO05D007967 3.1e-129 465.7 290 83.1
Actinidia34080 Actinidia chinensis HOM05D005936 ORTHO05D007967 4.1e-129 465.3 300 80.7
Potri.015G135400 Populus trichocarpa HOM05D005936 ORTHO05D007967 5.3e-129 464.9 300 79.7
Eucgr.A02812 Eucalyptus grandis HOM05D005936 ORTHO05D007967 9.1e-129 464.2 300 79.7
Sabra15G0147400 Salix brachista HOM05D005936 ORTHO05D007967 9.1e-129 464.2 317 77.3
Nitab4.5_0001083g0080 Nicotiana tabacum HOM05D005936 ORTHO05D007967 2.6e-128 462.6 307 78.5
Peaxi162Scf00915g00243 Petunia axillaris HOM05D005936 ORTHO05D007967 1.0e-127 460.7 304 79.3
PGR042G3346 Punica granatum HOM05D005936 ORTHO05D007967 1.3e-127 460.3 306 80.1
Ah.13g068310 Amaranthus hybridus HOM05D005936 ORTHO05D007967 1.1e-126 457.2 302 80.8
GSVIVG01010618001 Vitis vinifera HOM05D005936 ORTHO05D007967 2.5e-126 456.1 300 80.7
vmacro06722 Vaccinium macrocarpon HOM05D005936 ORTHO05D007967 7.2e-126 454.5 293 81.6
Rhsim03G0177300 Rhododendron simsii HOM05D005936 ORTHO05D007967 1.6e-125 453.4 300 80.7
Cc00_g24160 Coffea canephora HOM05D005936 ORTHO05D007967 6.1e-125 451.4 294 80.6
Migut.F00375 Erythranthe guttata HOM05D005936 ORTHO05D007967 1.4e-124 450.3 302 78.8
Nn1g01364 Nelumbo nucifera HOM05D005936 ORTHO05D007967 1.8e-124 449.9 299 76.6
PGSC0003DMG400014268 Solanum tuberosum HOM05D005936 ORTHO05D007967 3.0e-124 449.1 300 78.7
Ciclev10005510m.g Citrus clementina HOM05D005936 ORTHO05D007967 3.9e-124 448.7 290 80.3
SalBow1G7635 Salvia bowleyana HOM05D005936 ORTHO05D007967 5.2e-124 448.4 289 79.6
AUR62016030 Chenopodium quinoa HOM05D005936 ORTHO05D007967 6.7e-124 448.0 291 80.8
AUR62021235 Chenopodium quinoa HOM05D005936 ORTHO05D007967 6.7e-124 448.0 291 80.8
PSO782G1152 Papaver somniferum HOM05D005936 ORTHO05D007967 4.4e-123 445.3 291 79.7
TPR.G17430 Trifolium pratense HOM05D005936 ORTHO05D007967 9.7e-123 444.1 303 77.6
TAR374G0336 Trochodendron aralioides HOM05D005936 ORTHO05D007967 9.7e-123 444.1 300 77.3
Aa31LG3G8470 Aethionema arabicum HOM05D005936 ORTHO05D007967 2.2e-122 443.0 301 77.1
THA.LOC104811994 Tarenaya hassleriana HOM05D005936 ORTHO05D007967 2.2e-122 443.0 299 77.6
BraA03t10875Z Brassica rapa HOM05D005936 ORTHO05D007967 3.7e-122 442.2 301 77.1
COL.COLO4_14264 Corchorus olitorius HOM05D005936 ORTHO05D007967 1.1e-121 440.7 300 77.7
Solyc03g026210.4 Solanum lycopersicum HOM05D005936 ORTHO05D007967 1.4e-121 440.3 300 77.7
BcaC01g06163 Brassica carinata HOM05D005936 ORTHO05D007967 1.8e-121 439.9 301 76.7
BolC3t14249H Brassica oleracea HOM05D005936 ORTHO05D007967 1.8e-121 439.9 301 76.7
PSO478G3778 Papaver somniferum HOM05D005936 ORTHO05D007967 2.4e-121 439.5 301 76.4
BcaB01g04183 Brassica carinata HOM05D005936 ORTHO05D007967 3.1e-121 439.1 301 76.1
Sp6g14350 Schrenkiella parvula HOM05D005936 ORTHO05D007967 4.1e-121 438.7 301 75.7
SpUn0060_0040 Schrenkiella parvula HOM05D005936 ORTHO05D007967 4.1e-121 438.7 301 75.7
Glyma.10G238800 Glycine max HOM05D005936 ORTHO05D007967 7.0e-121 438.0 302 76.2
Medtr1g101400 Medicago truncatula HOM05D005936 ORTHO05D007967 7.0e-121 438.0 306 77.1
VMungo0720G1210 Vigna mungo HOM05D005936 ORTHO05D007967 1.6e-120 436.8 303 75.2
AT5G52100 Arabidopsis thaliana HOM05D005936 ORTHO05D007967 2.6e-120 436.0 301 75.7
Aqoxy7G00442 Aquilegia oxysepala HOM05D005936 ORTHO05D007967 5.9e-120 434.9 303 75.9
A03p15850 Brassica napus HOM05D005936 ORTHO05D007967 5.9e-120 434.9 291 78.0
Carub.0008s1218 Capsella rubella HOM05D005936 ORTHO05D007967 1.0e-119 434.1 281 79.0
LjContig00238g0017909 Lotus japonicus HOM05D005936 ORTHO05D007967 1.0e-119 434.1 302 76.5
Phvul.007G066600 Phaseolus vulgaris HOM05D005936 ORTHO05D007967 1.0e-119 434.1 303 75.9
AL8G26470 Arabidopsis lyrata HOM05D005936 ORTHO05D007967 5.0e-119 431.8 301 75.7
Lalb_Chr21g0304951 Lupinus albus HOM05D005936 ORTHO05D007967 5.0e-119 431.8 302 75.5
ATR0757G004 Amborella trichopoda HOM05D005936 ORTHO05D007967 1.6e-117 426.8 275 78.9
Dinv28478 Davidia involucrata HOM05D005936 ORTHO05D007967 2.1e-117 426.4 265 83.0
Hma1.2p1_0010F.1_g006890 Hydrangea macrophylla HOM05D005936 ORTHO05D007967 2.1e-117 426.4 252 87.3
C03p18520 Brassica napus HOM05D005936 ORTHO05D007967 2.3e-116 422.9 316 72.2
Lsat_1_v5_gn_8_7461 Lactuca sativa HOM05D005936 ORTHO05D007967 2.3e-116 422.9 302 74.8
MELO3C006876.2 Cucumis melo HOM05D005936 ORTHO05D007967 6.8e-116 421.4 262 83.6
HanXRQChr13g0405681 Helianthus annuus HOM05D005936 ORTHO05D007967 2.6e-115 419.5 302 72.8
arahy.Tifrunner.gnm1.ann1.UTGK89 Arachis hypogaea HOM05D005936 ORTHO05D007967 4.4e-115 418.7 283 77.4
ECA233G0165 Erigeron canadensis HOM05D005936 ORTHO05D007967 8.3e-114 414.5 271 78.6
EL10Ac3g05696 Beta vulgaris HOM05D005936 ORTHO05D007967 1.4e-113 413.7 301 73.8
Manes.06G143900 Manihot esculenta HOM05D005936 ORTHO05D007967 1.7e-111 406.8 262 79.4
Lj1C993G3 Lonicera japonica HOM05D005936 ORTHO05D007967 1.6e-109 400.2 302 72.5
TWI23G0201 Tripterygium wilfordii HOM05D005936 ORTHO05D007967 6.1e-109 398.3 291 72.9
arahy.Tifrunner.gnm1.ann1.AYWY8E Arachis hypogaea HOM05D005936 ORTHO05D007967 4.0e-108 395.6 329 68.1
Os03g0118600 Oryza sativa ssp. japonica HOM05D005936 ORTHO05D007967 9.8e-107 391.0 283 70.0
Ca_10793_v3 Cicer arietinum L. HOM05D005936 ORTHO05D007967 4.8e-106 388.7 263 79.8
Haze_13754 Corylus avellana HOM05D005936 ORTHO05D007967 3.1e-105 386.0 272 76.1
unitig_0.g2488 Utricularia gibba HOM05D005936 ORTHO05D007967 5.9e-104 381.7 300 68.0
Psat6g200960 Pisum sativum HOM05D005936 ORTHO05D007967 1.1e-102 377.5 240 81.7
MBI12_g29760_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 9.5e-102 374.4 300 68.0
CDE09G1316 Ceratophyllum demersum HOM05D005936 ORTHO05D007967 1.8e-97 360.1 240 76.2
Sed0016287 Sechium edule HOM05D005936 ORTHO05D007967 7.8e-96 354.8 219 83.1
SEGI_11434 Sequoiadendron giganteum HOM05D005936 ORTHO05D007967 1.4e-89 334.0 295 58.0
MD01G1197100 Malus domestica HOM05D005936 ORTHO05D007967 3.5e-88 329.3 321 62.3
Thhalv10014460m.g Eutrema salsugineum HOM05D005936 ORTHO05D007967 4.6e-88 328.9 230 76.1
TAR375G0526 Trochodendron aralioides HOM05D005936 ORTHO05D007967 3.0e-87 326.2 262 68.7
Actinidia32894 Actinidia chinensis HOM05D005936 ORTHO05D007967 1.1e-86 324.3 226 78.8
Pp3c21_9920 Physcomitrium patens HOM05D005936 ORTHO05D007967 4.1e-81 305.8 282 56.7
Glyma.20G155600 Glycine max HOM05D005936 ORTHO05D007967 1.1e-78 297.7 219 73.5
vmacro06720 Vaccinium macrocarpon HOM05D005936 ORTHO05D007967 1.5e-78 297.4 254 65.4
SMO367G1305 Selaginella moellendorffii HOM05D005936 ORTHO05D007967 1.2e-77 294.3 308 50.6
Mapoly0001s0282 Marchantia polymorpha HOM05D005936 ORTHO05D007967 1.7e-74 283.9 272 55.9
MD01G1197000 Malus domestica HOM05D005936 ORTHO05D007967 7.8e-72 275.0 307 57.0
Hund04704 Selenicereus undatus HOM05D005936 ORTHO05D007967 1.7e-71 273.9 249 62.7
Zm00001eb001140 Zea mays HOM05D005936 ORTHO05D007967 3.6e-69 266.2 180 75.0
MBI12_g45864_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 1.3e-63 247.7 227 62.1
CBR_g30244 Chara braunii HOM05D005936 ORTHO05D007967 1.1e-62 244.6 293 45.7
MBI18_g06814_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.1e-61 240.4 229 60.3
MBI18_g40469_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.0e-59 233.8 182 70.3
FAN01G1428 Fragaria x ananassa HOM05D005936 ORTHO05D007967 5.8e-59 232.3 199 66.8
MSTRG.8763 Avicennia marina HOM05D005936 ORTHO05D007967 1.6e-56 224.2 157 75.2
CAN.G548.3 Capsicum annuum HOM05D005936 ORTHO05D007967 7.9e-56 221.9 157 73.2
Duzib205G1997 Durio zibethinus HOM05D005936 ORTHO05D007967 3.3e-54 216.5 194 66.0
CARHR265020 Cardamine hirsuta HOM05D005936 ORTHO05D007967 6.2e-53 212.2 158 72.8
AagrBONN_evm.TU.Sc2ySwM_340.388 Anthoceros agrestis HOM05D003851 ORTHO05D005657 4.0e-52 209.5 194 57.7
Cpa.g.sc107.7 Carica papaya HOM05D005936 ORTHO05D007967 6.9e-52 208.8 158 71.5
Sopen03g005080 Solanum pennellii HOM05D005936 ORTHO05D007967 3.5e-48 196.4 121 83.5
MBI09_g40772_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 4.3e-46 189.5 154 68.2
Os03g0117000 Oryza sativa ssp. japonica HOM05D005936 ORTHO05D007967 4.3e-46 189.5 186 57.0
MBI18_g34964_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 6.9e-44 182.2 154 64.9
MBI18_g28463_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 1.7e-42 177.6 155 64.5
Cpa.g.sc107.8 Carica papaya HOM05D005936 ORTHO05D007967 2.7e-40 170.2 117 74.4
MBI08_g23116_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 1.3e-37 161.4 139 64.0
MBI07_g12175_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 5.1e-31 139.4 158 53.8
MBI15_g15729_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 6.1e-16 89.4 83 60.2
RcHm_v2.0_Chr1g0376771 Rosa chinensis HOM05D005936 ORTHO05D342530 7.9e-16 89.0 134 47.0
MBI16_g19597_MAGBIO Magnolia biondii HOM05D005936 ORTHO05D007967 2.9e-10 70.5 86 48.8
VMungo1127G1192 Vigna mungo HOM05D005936 ORTHO05D000671 2.7e-08 63.9 211 30.3


User provided reference genes

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