Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 3.7e-118 428.3 231 100.0
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 8.2e-110 400.6 231 87.0
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 2.4e-109 399.1 231 87.0
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.1e-109 398.3 231 91.8
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.3e-109 397.9 231 89.2
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.5e-108 396.4 231 91.8
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.2e-106 388.7 231 85.3
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 9.4e-90 334.0 242 71.1
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 3.6e-89 332.0 233 73.0
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 1.1e-82 310.5 240 65.0
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.2e-79 300.4 243 64.6
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 2.2e-78 296.2 241 64.7
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 4.9e-78 295.0 236 63.6
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 1.1e-77 293.9 245 63.3
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 1.4e-77 293.5 239 65.7
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 1.8e-77 293.1 236 67.4
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 2.4e-77 292.7 241 65.1
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 3.1e-77 292.4 239 64.0
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 3.1e-77 292.4 255 61.6
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 4.1e-77 292.0 254 58.7
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 7.0e-77 291.2 244 62.3
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 7.0e-77 291.2 244 60.7
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.6e-76 290.0 239 60.3
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.0e-76 289.7 239 64.9
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 2.7e-76 289.3 235 63.0
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 4.5e-76 288.5 245 62.9
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 1.0e-75 287.3 244 67.6
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 1.0e-75 287.3 254 60.6
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 1.3e-75 287.0 240 60.4
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 1.3e-75 287.0 241 63.1
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 1.3e-75 287.0 246 61.8
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 1.7e-75 286.6 235 60.9
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 3.8e-75 285.4 241 62.2
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 1.1e-74 283.9 242 61.6
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 1.9e-74 283.1 237 62.0
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 3.3e-74 282.3 217 69.6
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 7.3e-74 281.2 239 62.3
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 9.5e-74 280.8 239 66.5
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.1e-73 279.6 250 60.4
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 2.1e-73 279.6 239 63.6
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 3.6e-73 278.9 241 62.2
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 6.1e-73 278.1 233 63.5
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 8.0e-73 277.7 240 59.6
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.4e-72 276.9 251 60.2
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 3.0e-72 275.8 240 59.6
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 3.0e-72 275.8 242 59.9
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 4.0e-72 275.4 233 62.7
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 6.8e-72 274.6 219 63.5
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 6.8e-72 274.6 254 56.7
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 6.8e-72 274.6 243 60.1
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.5e-71 273.5 249 58.6
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.0e-71 273.1 250 59.6
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 2.0e-71 273.1 249 59.0
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 3.4e-71 272.3 218 65.1
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 5.8e-71 271.6 247 59.5
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 2.2e-70 269.6 234 62.0
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.4e-69 266.9 246 57.3
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 2.4e-69 266.2 199 66.3
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 4.1e-69 265.4 259 54.4
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 5.4e-69 265.0 244 59.0
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 6.0e-68 261.5 246 56.5
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 7.8e-68 261.2 233 57.5
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 1.3e-67 260.4 239 57.7
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 1.3e-67 260.4 182 69.8
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 1.3e-67 260.4 246 55.7
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 3.0e-67 259.2 233 57.5
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 3.9e-67 258.8 233 58.4
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 8.6e-67 257.7 196 63.3
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 3.3e-66 255.8 216 60.2
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 9.5e-66 254.2 257 58.0
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 2.3e-64 249.6 250 55.2
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 5.8e-63 245.0 240 55.0
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 2.1e-60 236.5 221 55.7
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 4.6e-60 235.3 172 68.0
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.3e-59 233.8 249 53.0
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 6.6e-59 231.5 236 53.8
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 1.1e-58 230.7 241 53.9
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 1.9e-58 229.9 186 58.6
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 7.3e-58 228.0 182 60.4
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 1.2e-57 227.3 234 55.6
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 1.6e-57 226.9 184 62.0
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 3.6e-57 225.7 214 56.1
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 3.6e-57 225.7 214 56.1
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 4.7e-57 225.3 224 54.5
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 6.2e-57 224.9 214 55.6
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 2.3e-56 223.0 189 57.7
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 3.1e-56 222.6 214 55.1
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 3.1e-56 222.6 214 55.1
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 5.2e-56 221.9 222 54.1
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 5.2e-56 221.9 211 55.5
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 2.0e-55 219.9 203 55.7
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 2.6e-55 219.5 139 76.3
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 4.4e-55 218.8 140 72.1
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.0e-51 207.6 178 61.8
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 6.6e-51 204.9 196 53.6
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 5.6e-50 201.8 182 54.4
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.5e-47 193.7 239 50.6
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 5.4e-45 185.3 180 53.3
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.5e-44 182.6 208 46.2
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 2.3e-43 179.9 208 45.7
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 3.9e-43 179.1 207 45.4
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 2.1e-41 173.3 175 49.1
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 2.0e-39 166.8 210 45.7
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.4e-39 166.0 175 46.9
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 2.7e-36 156.4 213 43.2
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 8.1e-33 144.8 88 76.1
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.8e-32 143.7 172 48.8
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 2.0e-31 140.2 133 57.1
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.1e-29 134.4 226 35.0
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 1.8e-24 117.1 187 36.9
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 2.4e-24 116.7 153 43.8
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 6.9e-24 115.2 83 65.1
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 5.3e-16 89.0 66 60.6
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 4.5e-15 85.9 155 34.8
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 2.5e-13 80.1 142 33.1
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.5e-10 70.9 121 32.2
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 3.1e-08 63.2 52 53.8
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 4.1e-08 62.8 62 51.6
Cre10.g463800 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 2.9e-06 56.6 114 36.0


User provided reference genes

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