Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375761 Rosa chinensis HOM05D002446 ORTHO05D037487 1.1e-39 166.0 78 100.0
RcHm_v2.0_Chr1g0375841 Rosa chinensis HOM05D002446 ORTHO05D002941 1.3e-30 136.0 70 87.1
FAN01G1702 Fragaria x ananassa HOM05D002446 ORTHO05D002941 1.1e-29 132.9 70 84.3
FvH4_7g28480 Fragaria vesca HOM05D002446 ORTHO05D002941 1.8e-29 132.1 70 82.9
FAN06G2835 Fragaria x ananassa HOM05D002446 ORTHO05D002941 1.8e-29 132.1 70 82.9
Prupe.2G285300 Prunus persica HOM05D002446 ORTHO05D002941 2.4e-29 131.7 70 81.4
FAN10G1083 Fragaria x ananassa HOM05D002446 ORTHO05D002941 4.1e-29 131.0 70 81.4
FAN06G3069 Fragaria x ananassa HOM05D002446 ORTHO05D002941 7.0e-29 130.2 70 81.4
FAN03G0786 Fragaria x ananassa HOM05D002446 ORTHO05D002941 9.1e-29 129.8 70 82.9
QL12p039172 Quercus lobata HOM05D002446 ORTHO05D002941 2.0e-28 128.6 71 77.5
MD01G1188600 Malus domestica HOM05D002446 ORTHO05D002941 7.7e-28 126.7 69 81.2
TWI39G1160 Tripterygium wilfordii HOM05D002446 ORTHO05D002941 5.0e-27 124.0 69 78.3
FvH4_7g28490 Fragaria vesca HOM05D002446 ORTHO05D002941 8.5e-27 123.2 73 78.1
FAN10G2838 Fragaria x ananassa HOM05D002446 ORTHO05D002941 8.5e-27 123.2 73 78.1
CANSAT21G0797 Cannabis sativa HOM05D002446 ORTHO05D002941 1.1e-26 122.9 69 81.2
CANSAT21G1002 Cannabis sativa HOM05D002446 ORTHO05D002941 1.1e-26 122.9 69 81.2
Eucgr.A02861 Eucalyptus grandis HOM05D002446 ORTHO05D002941 1.9e-26 122.1 75 69.3
MD01G1188500 Malus domestica HOM05D002446 ORTHO05D002941 1.9e-26 122.1 69 76.8
Cfa008245 Carpinus fangiana HOM05D002446 ORTHO05D002941 2.5e-26 121.7 70 74.3
Haze_13806 Corylus avellana HOM05D002446 ORTHO05D002941 5.5e-26 120.6 69 75.4
FAN01G1192 Fragaria x ananassa HOM05D002446 ORTHO05D002941 5.5e-26 120.6 73 76.7
RcHm_v2.0_Chr1g0375871 Rosa chinensis HOM05D002446 ORTHO05D002941 7.2e-26 120.2 73 75.3
Atru.chr1.596 Acer truncatum HOM05D002446 ORTHO05D002941 9.4e-26 119.8 69 73.9
Rhsim09G0194500 Rhododendron simsii HOM05D002446 ORTHO05D002941 9.4e-26 119.8 69 75.4
CiPaw.04G064200 Carya illinoinensis HOM05D002446 ORTHO05D002941 2.7e-25 118.2 70 74.3
Dinv28519 Davidia involucrata HOM05D002446 ORTHO05D002941 3.6e-25 117.9 71 71.8
Ciclev10004832m.g Citrus clementina HOM05D002446 ORTHO05D002941 1.0e-24 116.3 73 67.1
Lsat_1_v5_gn_2_129881 Lactuca sativa HOM05D002446 ORTHO05D002941 1.4e-24 115.9 69 71.0
Actinidia03090 Actinidia chinensis HOM05D002446 ORTHO05D002941 1.8e-24 115.5 69 72.5
PSO782G1007 Papaver somniferum HOM05D002446 ORTHO05D002941 2.3e-24 115.2 70 68.6
Sc19g0001800 Simmondsia chinensis HOM05D002446 ORTHO05D002941 2.3e-24 115.2 71 74.6
TWI39G0998 Tripterygium wilfordii HOM05D002446 ORTHO05D002941 5.2e-24 114.0 71 69.0
SalBow4G1683 Salvia bowleyana HOM05D002446 ORTHO05D002941 6.8e-24 113.6 72 68.1
vmacro09878 Vaccinium macrocarpon HOM05D002446 ORTHO05D002941 8.8e-24 113.2 69 71.0
ECA238G3373 Erigeron canadensis HOM05D002446 ORTHO05D002941 1.2e-23 112.8 69 71.0
HanXRQChr07g0206631 Helianthus annuus HOM05D002446 ORTHO05D002941 1.2e-23 112.8 69 72.5
HanXRQChr07g0206671 Helianthus annuus HOM05D002446 ORTHO05D002941 3.4e-23 111.3 69 71.0
Potri.012G131400 Populus trichocarpa HOM05D002446 ORTHO05D002941 3.4e-23 111.3 71 64.8
Potri.015G133500 Populus trichocarpa HOM05D002446 ORTHO05D002941 3.4e-23 111.3 69 69.6
THA.LOC104824841 Tarenaya hassleriana HOM05D002446 ORTHO05D002941 3.4e-23 111.3 69 71.0
Cpa.g.sc3.250 Carica papaya HOM05D002446 ORTHO05D002941 5.7e-23 110.5 72 69.4
DCAR_018138 Daucus carota HOM05D002446 ORTHO05D002941 7.5e-23 110.2 70 68.6
PSO478G0710 Papaver somniferum HOM05D002446 ORTHO05D002941 7.5e-23 110.2 69 66.7
PSO478G4154 Papaver somniferum HOM05D002446 ORTHO05D002941 9.8e-23 109.8 71 64.8
Peaxi162Scf00192g00822 Petunia axillaris HOM05D002446 ORTHO05D002941 9.8e-23 109.8 70 68.6
MSTRG.8789 Avicennia marina HOM05D002446 ORTHO05D002941 1.3e-22 109.4 69 66.7
Nitab4.5_0006353g0010 Nicotiana tabacum HOM05D002446 ORTHO05D002941 2.2e-22 108.6 70 62.9
Sabra12G0098900 Salix brachista HOM05D002446 ORTHO05D002941 2.2e-22 108.6 71 62.0
TAR375G0746 Trochodendron aralioides HOM05D002446 ORTHO05D002941 3.7e-22 107.8 71 67.6
Oeu039224.1 Olea europaea HOM05D002446 ORTHO05D002941 4.9e-22 107.5 69 66.7
TAR375G0825 Trochodendron aralioides HOM05D002446 ORTHO05D002941 4.9e-22 107.5 69 69.6
Thecc.03G164400 Theobroma cacao HOM05D002446 ORTHO05D002941 6.3e-22 107.1 75 62.7
Cc02_g03720 Coffea canephora HOM05D002446 ORTHO05D002941 8.3e-22 106.7 70 61.4
Migut.F00410 Erythranthe guttata HOM05D002446 ORTHO05D002941 8.3e-22 106.7 69 68.1
SGA_v2.0_scaffold2G01108 Striga asiatica HOM05D002446 ORTHO05D002941 8.3e-22 106.7 68 70.6
Lj1A986T55 Lonicera japonica HOM05D002446 ORTHO05D002941 1.1e-21 106.3 70 68.6
Lj5g0028001 Lotus japonicus HOM05D002446 ORTHO05D002941 1.1e-21 106.3 70 68.6
PGR042G0934 Punica granatum HOM05D002446 ORTHO05D002941 1.1e-21 106.3 67 71.6
arahy.Tifrunner.gnm1.ann1.6GA0DJ Arachis hypogaea HOM05D002446 ORTHO05D002941 1.4e-21 105.9 68 67.6
arahy.Tifrunner.gnm1.ann1.IQP7TJ Arachis hypogaea HOM05D002446 ORTHO05D002941 1.4e-21 105.9 68 67.6
Duzib084G0992 Durio zibethinus HOM05D002446 ORTHO05D002941 2.4e-21 105.1 70 68.6
Glyma.20G152400 Glycine max HOM05D002446 ORTHO05D002941 2.4e-21 105.1 68 64.7
RcHm_v2.0_Chr1g0375821 Rosa chinensis HOM05D002446 ORTHO05D002941 4.1e-21 104.4 55 90.9
PGSC0003DMG400031031 Solanum tuberosum HOM05D002446 ORTHO05D002941 4.1e-21 104.4 68 67.6
Lj5C389T7 Lonicera japonica HOM05D002446 ORTHO05D002941 7.0e-21 103.6 71 66.2
Lalb_Chr21g0304871 Lupinus albus HOM05D002446 ORTHO05D002941 7.0e-21 103.6 70 64.3
Glyma.10G241800 Glycine max HOM05D002446 ORTHO05D002941 9.1e-21 103.2 68 64.7
Nitab4.5_0000072g0120 Nicotiana tabacum HOM05D002446 ORTHO05D002941 9.1e-21 103.2 68 64.7
GSVIVG01018468001 Vitis vinifera HOM05D002446 ORTHO05D002941 9.1e-21 103.2 72 62.5
Gorai.008G282700 Gossypium raimondii HOM05D002446 ORTHO05D002941 1.6e-20 102.4 69 66.7
Medtr1g102230 Medicago truncatula HOM05D002446 ORTHO05D002941 1.6e-20 102.4 68 61.8
Duzib205G1881 Durio zibethinus HOM05D002446 ORTHO05D002941 2.0e-20 102.1 70 65.7
Gohir.A12G263200 Gossypium hirsutum HOM05D002446 ORTHO05D002941 2.0e-20 102.1 69 66.7
Ca_10829_v3 Cicer arietinum L. HOM05D002446 ORTHO05D002941 2.7e-20 101.7 68 61.8
COL.COLO4_14206 Corchorus olitorius HOM05D002446 ORTHO05D002941 3.5e-20 101.3 66 71.2
Sed0010109 Sechium edule HOM05D002446 ORTHO05D002941 3.5e-20 101.3 70 60.0
Solyc03g006980.4 Solanum lycopersicum HOM05D002446 ORTHO05D002941 5.9e-20 100.5 68 64.7
Sopen03g002980 Solanum pennellii HOM05D002446 ORTHO05D002941 7.7e-20 100.1 68 64.7
TPR.G26103 Trifolium pratense HOM05D002446 ORTHO05D002941 7.7e-20 100.1 68 60.3
Lalb_Chr02g0140801 Lupinus albus HOM05D002446 ORTHO05D002941 1.0e-19 99.8 68 64.7
Manes.14G031700 Manihot esculenta HOM05D002446 ORTHO05D002941 1.3e-19 99.4 66 66.7
Gohir.D12G263700 Gossypium hirsutum HOM05D002446 ORTHO05D002941 1.7e-19 99.0 69 65.2
VMungo0720G2896 Vigna mungo HOM05D002446 ORTHO05D002941 2.3e-19 98.6 68 61.8
MBI04_g28557_MAGBIO Magnolia biondii HOM05D002446 ORTHO05D002941 2.9e-19 98.2 69 71.0
Ah.04g156340 Amaranthus hybridus HOM05D002446 ORTHO05D002941 5.0e-19 97.4 70 65.7
ClCG01G001290 Citrullus lanatus HOM05D002446 ORTHO05D002941 1.1e-18 96.3 70 52.9
AUR62016078 Chenopodium quinoa HOM05D002446 ORTHO05D002941 1.5e-18 95.9 71 63.4
Psat6g203800 Pisum sativum HOM05D002446 ORTHO05D002941 1.5e-18 95.9 68 58.8
AUR62021287 Chenopodium quinoa HOM05D002446 ORTHO05D002941 2.5e-18 95.1 71 63.4
CAN.G1409.1 Capsicum annuum HOM05D002446 ORTHO05D002941 5.5e-18 94.0 67 65.7
EL10Ac3g05762 Beta vulgaris HOM05D002446 ORTHO05D002941 9.5e-18 93.2 71 63.4
Phvul.007G063900 Phaseolus vulgaris HOM05D002446 ORTHO05D002941 9.5e-18 93.2 68 60.3
MELO3C005806.2 Cucumis melo HOM05D002446 ORTHO05D002941 1.8e-16 89.0 73 52.1
Hund04662 Selenicereus undatus HOM05D002446 ORTHO05D002941 1.8e-16 89.0 68 63.2
CsaV3_5G001420 Cucumis sativus L. HOM05D002446 ORTHO05D002941 2.3e-16 88.6 72 52.8
unitig_0.g1586 Utricularia gibba HOM05D002446 ORTHO05D037487 4.0e-16 87.8 68 58.8
CSS0021944 Camellia sinensis var. sinensis HOM05D002446 ORTHO05D002941 8.9e-16 86.7 59 59.3
HPP92_006938 Vanilla planifolia HOM05D002446 ORTHO05D002941 3.7e-14 81.3 65 61.5
HPP92_020956 Vanilla planifolia HOM05D002446 ORTHO05D002941 3.7e-14 81.3 76 52.6
Zm00001eb318780 Zea mays HOM05D002446 ORTHO05D002941 4.9e-14 80.9 66 57.6
HPP92_020936 Vanilla planifolia HOM05D002446 ORTHO05D037487 8.3e-14 80.1 74 52.7
ATR0757G132 Amborella trichopoda HOM05D002446 ORTHO05D002941 4.6e-12 74.3 69 52.2
Os09g0520800 Oryza sativa ssp. japonica HOM05D002446 ORTHO05D002941 1.7e-11 72.4 68 51.5
SEGI_32137 Sequoiadendron giganteum HOM05D002446 ORTHO05D002941 8.6e-11 70.1 73 42.5
SEGI_24300 Sequoiadendron giganteum HOM05D002446 ORTHO05D002941 5.6e-10 67.4 73 43.8
FAN03G0123 Fragaria x ananassa HOM05D002446 ORTHO05D002941 1.2e-09 66.2 42 73.8
SEGI_14180 Sequoiadendron giganteum HOM05D002446 ORTHO05D002941 1.2e-09 66.2 74 44.6
Eucgr.A02862 Eucalyptus grandis HOM05D002446 ORTHO05D002941 3.6e-09 64.7 38 76.3
SEGI_00812 Sequoiadendron giganteum HOM05D002446 ORTHO05D002941 1.0e-08 63.2 71 42.3
Pp3c3_30260 Physcomitrium patens HOM05D002446 ORTHO05D002941 3.1e-08 61.6 68 48.5
AagrBONN_evm.TU.Sc2ySwM_117.290 Anthoceros agrestis HOM05D002446 ORTHO05D002941 2.0e-07 58.9 84 40.5
AUR62029202 Chenopodium quinoa HOM05D002446 ORTHO05D002941 2.0e-07 58.9 69 47.8
SalBow4G0266 Salvia bowleyana HOM05D002446 ORTHO05D002941 7.5e-07 57.0 34 70.6
Ah.01g003200 Amaranthus hybridus HOM05D002446 ORTHO05D002941 9.8e-07 56.6 50 54.0
AUR62014939 Chenopodium quinoa HOM05D002446 ORTHO05D002941 9.8e-07 56.6 69 44.9
Sc21g0007230 Simmondsia chinensis HOM05D002446 ORTHO05D002941 9.8e-07 56.6 69 47.8
ATR0680G143 Amborella trichopoda HOM05D002446 ORTHO05D002941 2.9e-06 55.1 67 43.3
ATR0680G222 Amborella trichopoda HOM05D002446 ORTHO05D002941 4.9e-06 54.3 67 43.3


User provided reference genes

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