Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0375651 Rosa chinensis HOM05D003568 ORTHO05D004104 4.1e-44 181.0 92 100.0
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 6.1e-16 87.4 108 51.9
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 1.0e-15 86.7 106 53.8
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 1.8e-15 85.9 108 50.0
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 2.3e-15 85.5 92 57.6
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.0e-15 85.1 108 49.1
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.0e-15 85.1 108 49.1
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 4.0e-15 84.7 108 50.9
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 5.2e-15 84.3 106 50.9
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 5.2e-15 84.3 108 50.0
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 5.2e-15 84.3 108 50.9
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 6.8e-15 84.0 110 48.2
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 8.8e-15 83.6 108 50.0
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 8.8e-15 83.6 108 48.1
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 1.2e-14 83.2 108 49.1
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.2e-14 83.2 110 48.2
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 1.2e-14 83.2 108 50.9
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 1.5e-14 82.8 106 50.9
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.5e-14 82.8 108 49.1
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 1.5e-14 82.8 108 50.9
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.5e-14 82.8 108 49.1
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 2.0e-14 82.4 108 49.1
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 2.0e-14 82.4 108 48.1
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.6e-14 82.0 108 49.1
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.6e-14 82.0 108 49.1
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 49.1
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 48.1
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 48.1
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 49.1
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 47.2
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 49.1
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 3.4e-14 81.6 108 48.1
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 4.4e-14 81.3 108 50.0
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 5.7e-14 80.9 108 47.2
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 5.7e-14 80.9 108 46.3
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 5.7e-14 80.9 108 47.2
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 5.7e-14 80.9 108 47.2
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 5.7e-14 80.9 108 47.2
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 47.2
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 48.1
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 47.2
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 47.2
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 49.1
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 9.8e-14 80.1 106 48.1
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 48.1
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 9.8e-14 80.1 108 48.1
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.3e-13 79.7 108 48.1
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 1.7e-13 79.3 108 47.2
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 1.7e-13 79.3 108 48.1
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 1.7e-13 79.3 108 47.2
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 2.2e-13 79.0 107 47.7
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 2.2e-13 79.0 107 47.7
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 2.2e-13 79.0 108 47.2
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 2.2e-13 79.0 108 47.2
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 2.2e-13 79.0 108 47.2
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 2.8e-13 78.6 123 44.7
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 2.8e-13 78.6 108 47.2
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 2.8e-13 78.6 107 47.7
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 2.8e-13 78.6 108 46.3
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 3.7e-13 78.2 108 47.2
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 3.7e-13 78.2 107 47.7
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 3.7e-13 78.2 107 47.7
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.7e-13 78.2 109 47.7
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 3.7e-13 78.2 109 47.7
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.7e-13 78.2 108 48.1
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 3.7e-13 78.2 108 47.2
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 3.7e-13 78.2 108 47.2
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 4.9e-13 77.8 106 46.2
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 4.9e-13 77.8 108 47.2
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.9e-13 77.8 108 47.2
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 4.9e-13 77.8 106 48.1
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 4.9e-13 77.8 106 48.1
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 4.9e-13 77.8 108 47.2
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 6.3e-13 77.4 108 47.2
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.3e-13 77.4 108 46.3
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 6.3e-13 77.4 108 46.3
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 6.3e-13 77.4 108 46.3
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 8.3e-13 77.0 108 46.3
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 8.3e-13 77.0 108 45.4
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 1.1e-12 76.6 108 46.3
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 1.1e-12 76.6 108 45.4
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 1.4e-12 76.3 108 46.3
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 1.4e-12 76.3 92 54.3
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 1.8e-12 75.9 108 46.3
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 1.8e-12 75.9 107 45.8
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.4e-12 75.5 107 44.9
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 2.4e-12 75.5 108 46.3
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 2.4e-12 75.5 108 45.4
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 2.4e-12 75.5 108 45.4
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 3.1e-12 75.1 109 45.0
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 4.1e-12 74.7 107 45.8
PSO478G4032 Papaver somniferum HOM05D003568 ORTHO05D004104 4.1e-12 74.7 108 46.3
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 4.1e-12 74.7 107 45.8
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 5.4e-12 74.3 108 45.4
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 7.0e-12 73.9 108 45.4
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 7.0e-12 73.9 107 45.8
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 7.0e-12 73.9 108 42.6
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 7.0e-12 73.9 92 52.2
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 7.0e-12 73.9 108 44.4
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 9.2e-12 73.6 108 45.4
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 9.2e-12 73.6 107 45.8
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 1.2e-11 73.2 108 44.4
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 1.2e-11 73.2 108 44.4
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 1.2e-11 73.2 108 43.5
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.6e-11 72.8 108 44.4
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.0e-11 72.4 108 44.4
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 2.7e-11 72.0 108 44.4
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 7.8e-11 70.5 108 43.5
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 1.0e-10 70.1 108 43.5
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.0e-10 70.1 111 44.1
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 1.3e-10 69.7 109 41.3
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 1.7e-10 69.3 109 42.2
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 1.7e-10 69.3 109 42.2
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 2.9e-10 68.6 109 41.3
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.9e-10 68.6 61 60.7
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 2.9e-10 68.6 61 60.7
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 5.0e-10 67.8 99 47.5
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 5.0e-10 67.8 108 42.6
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 5.6e-09 64.3 108 41.7
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 9.5e-09 63.5 108 40.7
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.2e-08 63.2 107 41.1
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 2.8e-08 62.0 61 52.5
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 4.7e-08 61.2 103 41.7
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 4.7e-08 61.2 109 38.5
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 4.7e-08 61.2 109 38.5
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 6.1e-08 60.8 109 38.5
CAN.G77.8 Capsicum annuum HOM05D003568 ORTHO05D004104 1.4e-07 59.7 73 49.3
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 4.0e-07 58.2 87 47.1
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 4.0e-07 58.2 61 45.9
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 5.2e-07 57.8 60 53.3
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 5.2e-07 57.8 84 47.6
Solyc10g019110.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 5.2e-07 57.8 109 37.6
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 6.8e-07 57.4 61 52.5
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 6.8e-07 57.4 149 34.2
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 6.8e-07 57.4 71 47.9
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 6.8e-07 57.4 61 50.8
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.9e-07 57.0 94 40.4
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 8.9e-07 57.0 61 50.8
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.4e-06 55.1 116 35.3
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 5.7e-06 54.3 61 47.5


User provided reference genes

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